Variant report

Variant	rs73556772
Chromosome Location	chr11:108639696-108639697
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12279766	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12280780	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12291564	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1365045	1.00[EUR][1000 genomes]
rs1466501	1.00[EUR][1000 genomes]
rs17108567	1.00[EUR][1000 genomes]
rs17108597	1.00[EUR][1000 genomes]
rs17108600	1.00[EUR][1000 genomes]
rs17108665	1.00[EUR][1000 genomes]
rs17108712	1.00[EUR][1000 genomes]
rs17108715	1.00[EUR][1000 genomes]
rs17108771	1.00[EUR][1000 genomes]
rs3858401	1.00[EUR][1000 genomes]
rs61996357	1.00[EUR][1000 genomes]
rs73556751	1.00[AMR][1000 genomes]
rs73556800	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73558631	1.00[AMR][1000 genomes]
rs73558672	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108605800-108663800	Weak transcription	K562	blood
2	chr11:108607600-108644600	Weak transcription	Aorta	Aorta
3	chr11:108615600-108657000	Weak transcription	Primary B cells from cord blood	blood
4	chr11:108626200-108641600	Weak transcription	HSMM	muscle
5	chr11:108627800-108659400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:108629000-108661800	Weak transcription	Left Ventricle	heart
7	chr11:108629400-108644600	Weak transcription	Ovary	ovary
8	chr11:108629600-108648600	Weak transcription	Fetal Lung	lung
9	chr11:108629800-108657200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr11:108635000-108640200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr11:108637600-108645000	Weak transcription	A549	lung
12	chr11:108639000-108639800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:108639000-108640600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:108639400-108640400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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