Variant report

Variant	rs1466501
Chromosome Location	chr11:108594940-108594941
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12279766	1.00[EUR][1000 genomes]
rs12291564	1.00[EUR][1000 genomes]
rs17108567	1.00[EUR][1000 genomes]
rs17108597	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs17108600	1.00[EUR][1000 genomes]
rs17108665	1.00[EUR][1000 genomes]
rs17108712	1.00[EUR][1000 genomes]
rs17108715	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs17108771	1.00[EUR][1000 genomes]
rs3858401	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61996357	1.00[EUR][1000 genomes]
rs73556772	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv832264	chr11:108449613-108623720	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108564800-108595400	Weak transcription	Hela-S3	cervix
2	chr11:108575400-108599400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:108577600-108604400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:108578000-108604400	Weak transcription	Small Intestine	intestine
5	chr11:108578200-108596000	Weak transcription	Right Ventricle	heart
6	chr11:108578200-108604400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr11:108578800-108596800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:108578800-108604000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr11:108578800-108604000	Weak transcription	Colon Smooth Muscle	Colon
10	chr11:108578800-108604200	Weak transcription	NHLF	lung
11	chr11:108578800-108604600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr11:108578800-108614400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr11:108579000-108595600	Weak transcription	Colonic Mucosa	Colon
14	chr11:108579200-108604000	Weak transcription	HUVEC	blood vessel
15	chr11:108579600-108600600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr11:108579800-108595000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr11:108579800-108604200	Weak transcription	Psoas Muscle	Psoas
18	chr11:108580000-108603800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr11:108581000-108604200	Weak transcription	Fetal Heart	heart
20	chr11:108581200-108604200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr11:108581600-108626600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr11:108581800-108595000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr11:108581800-108595800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:108581800-108596000	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr11:108581800-108598200	Weak transcription	A549	lung
26	chr11:108581800-108600000	Weak transcription	Aorta	Aorta
27	chr11:108581800-108600000	Weak transcription	Pancreas	Pancrea
28	chr11:108581800-108603200	Weak transcription	Gastric	stomach
29	chr11:108581800-108603200	Weak transcription	Lung	lung
30	chr11:108581800-108603400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr11:108581800-108603400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr11:108581800-108604000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr11:108581800-108604200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr11:108581800-108604200	Weak transcription	Spleen	Spleen
35	chr11:108581800-108609800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr11:108581800-108610800	Weak transcription	Thymus	Thymus
37	chr11:108581800-108611400	Weak transcription	Brain Substantia Nigra	brain
38	chr11:108581800-108616200	Weak transcription	Esophagus	oesophagus
39	chr11:108582000-108600000	Weak transcription	Brain Angular Gyrus	brain
40	chr11:108582200-108600000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr11:108582800-108595400	Weak transcription	Brain Germinal Matrix	brain
42	chr11:108583000-108610600	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr11:108583200-108611600	Weak transcription	Fetal Lung	lung
44	chr11:108584200-108596400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr11:108584400-108604200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr11:108584600-108599800	Weak transcription	Osteobl	bone
47	chr11:108584600-108600400	Weak transcription	NHDF-Ad	bronchial
48	chr11:108584800-108605600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr11:108585200-108604000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:108586200-108596200	Weak transcription	NHEK	skin

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