Variant report

Variant	rs12279766
Chromosome Location	chr11:108700724-108700725
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12278355	1.00[EUR][1000 genomes]
rs12280780	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12291564	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1365045	1.00[EUR][1000 genomes]
rs1466501	1.00[EUR][1000 genomes]
rs17108567	1.00[EUR][1000 genomes]
rs17108597	1.00[EUR][1000 genomes]
rs17108600	1.00[EUR][1000 genomes]
rs17108665	1.00[EUR][1000 genomes]
rs17108712	1.00[EUR][1000 genomes]
rs17108715	1.00[EUR][1000 genomes]
rs17108771	1.00[EUR][1000 genomes]
rs3858401	1.00[EUR][1000 genomes]
rs61996357	1.00[EUR][1000 genomes]
rs73556751	1.00[AMR][1000 genomes]
rs73556772	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73556800	1.00[AMR][1000 genomes]
rs73558631	1.00[AMR][1000 genomes]
rs73558672	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108675600-108709400	Weak transcription	Left Ventricle	heart
2	chr11:108676000-108708000	Weak transcription	Primary B cells from cord blood	blood
3	chr11:108677600-108709600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:108680400-108709400	Weak transcription	Primary T cells from cord blood	blood
5	chr11:108680600-108724400	Weak transcription	Aorta	Aorta
6	chr11:108687000-108717000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr11:108692200-108709400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:108696400-108709200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:108700000-108701800	ZNF genes & repeats	GM12878-XiMat	blood
10	chr11:108700200-108709600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links