Variant report

Variant	rs6589056
Chromosome Location	chr11:108983820-108983821
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2136537	0.86[AFR][1000 genomes]
rs6589058	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7104600	1.00[AMR][1000 genomes]
rs7105306	1.00[AMR][1000 genomes]
rs7932402	1.00[AMR][1000 genomes]
rs7938477	0.91[YRI][hapmap];0.86[AFR][1000 genomes]
rs7946810	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv898390	chr11:108893765-109003536	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108982600-108984000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:108982600-108984200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr11:108982600-108984400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr11:108982600-108984400	Enhancers	Fetal Heart	heart
5	chr11:108982600-108986000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr11:108982800-108984000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr11:108982800-108984000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr11:108982800-108984200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr11:108982800-108984200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:108982800-108984600	Enhancers	Fetal Muscle Leg	muscle
11	chr11:108982800-108985400	Enhancers	Fetal Brain Male	brain
12	chr11:108982800-108985400	Enhancers	Fetal Brain Female	brain
13	chr11:108983000-108984000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:108983000-108984000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:108983000-108984200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr11:108983000-108984400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr11:108983000-108984400	Enhancers	Fetal Stomach	stomach
18	chr11:108983000-108986000	Enhancers	Brain Germinal Matrix	brain
19	chr11:108983200-108984200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr11:108983400-108984000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:108983400-108984000	Enhancers	Primary hematopoietic stem cells	blood
22	chr11:108983400-108984400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr11:108983600-108984000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr11:108983600-108984000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr11:108983600-108984000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr11:108983600-108984000	Enhancers	Left Ventricle	heart
27	chr11:108983600-108984400	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr11:108983800-108984200	Enhancers	H9 Cell Line	embryonic stem cell
29	chr11:108983800-108984600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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