Variant report

Variant	rs6590889
Chromosome Location	chr11:101438191-101438192
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10791496	0.87[ASN][1000 genomes]
rs10791497	0.87[ASN][1000 genomes]
rs10791498	0.87[ASN][1000 genomes]
rs10791499	0.87[ASN][1000 genomes]
rs10791500	0.85[ASN][1000 genomes]
rs10791503	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10791504	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10895141	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10895142	0.91[ASN][1000 genomes]
rs10895143	0.91[ASN][1000 genomes]
rs11224829	0.81[ASN][1000 genomes]
rs11224839	0.88[ASN][1000 genomes]
rs11224846	0.92[ASN][1000 genomes]
rs11224852	0.85[ASN][1000 genomes]
rs11224853	0.85[ASN][1000 genomes]
rs12226165	0.89[ASN][1000 genomes]
rs12419234	0.84[ASN][1000 genomes]
rs12786241	0.88[ASN][1000 genomes]
rs12801488	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17096904	0.81[ASN][1000 genomes]
rs4331057	0.86[ASN][1000 genomes]
rs4331058	0.86[ASN][1000 genomes]
rs4462305	0.86[ASN][1000 genomes]
rs4480511	0.88[ASN][1000 genomes]
rs4486597	0.88[ASN][1000 genomes]
rs4492784	0.88[ASN][1000 genomes]
rs4503499	0.98[ASN][1000 genomes]
rs4603270	0.86[ASN][1000 genomes]
rs4754013	0.87[ASN][1000 genomes]
rs4754014	0.88[ASN][1000 genomes]
rs4754770	0.88[ASN][1000 genomes]
rs4754771	0.88[ASN][1000 genomes]
rs4754776	0.92[ASN][1000 genomes]
rs4754779	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6590888	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7109771	0.81[ASN][1000 genomes]
rs7123327	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7125565	0.86[ASN][1000 genomes]
rs7128797	0.87[ASN][1000 genomes]
rs7932338	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9326314	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv2761703	chr11:101406049-101439667	Enhancers Flanking Active TSS Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv2754308	chr11:101409790-101502790	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv898331	chr11:101436689-101492630	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101426400-101447600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr11:101437000-101444400	Weak transcription	NHDF-Ad	bronchial
3	chr11:101437400-101438200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:101437400-101438400	Enhancers	H1 Cell Line	embryonic stem cell
5	chr11:101437400-101438400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr11:101437400-101438400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:101437400-101438400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr11:101437400-101438600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:101437600-101438200	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr11:101437800-101438400	Enhancers	Fetal Stomach	stomach
11	chr11:101438000-101438200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:101438000-101438200	Enhancers	Fetal Lung	lung
13	chr11:101438000-101438400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
14	chr11:101438000-101438400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
15	chr11:101438000-101438400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr11:101438000-101438400	Enhancers	Fetal Muscle Trunk	muscle
17	chr11:101438000-101438400	Enhancers	HepG2	liver
18	chr11:101438000-101438400	Enhancers	NHLF	lung
19	chr11:101438000-101438600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell

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