Variant report

Variant	rs12801488
Chromosome Location	chr11:101437986-101437987
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10791495	0.82[CHB][hapmap]
rs10791496	0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs10791497	0.84[ASN][1000 genomes]
rs10791498	0.84[ASN][1000 genomes]
rs10791499	0.84[ASN][1000 genomes]
rs10791500	0.83[ASN][1000 genomes]
rs10791503	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10791504	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10895135	1.00[CHB][hapmap]
rs10895140	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10895141	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10895142	1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs10895143	0.89[ASN][1000 genomes]
rs11224829	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs11224839	0.86[ASN][1000 genomes]
rs11224846	0.89[ASN][1000 genomes]
rs11224852	0.96[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs11224853	1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs11224855	0.82[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs11224878	0.81[ASN][1000 genomes]
rs12226165	0.95[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs12419234	0.82[ASN][1000 genomes]
rs12786241	0.86[ASN][1000 genomes]
rs17134809	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs28497867	0.81[ASN][1000 genomes]
rs4237603	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs4326755	0.83[CHB][hapmap]
rs4331057	0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs4331058	0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs4408275	0.83[CHB][hapmap]
rs4462305	0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs4469858	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs4480511	0.86[ASN][1000 genomes]
rs4486597	0.86[ASN][1000 genomes]
rs4492784	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs4501953	0.81[ASN][1000 genomes]
rs4503499	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4531428	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs4603270	0.83[ASN][1000 genomes]
rs4754012	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs4754013	0.84[ASN][1000 genomes]
rs4754014	0.86[ASN][1000 genomes]
rs4754770	0.86[ASN][1000 genomes]
rs4754771	0.86[ASN][1000 genomes]
rs4754774	0.82[JPT][hapmap]
rs4754776	0.87[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs4754777	0.83[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs4754779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59742038	0.81[ASN][1000 genomes]
rs60088687	0.82[ASN][1000 genomes]
rs6590888	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6590889	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7123327	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7125565	0.83[ASN][1000 genomes]
rs7128797	0.84[ASN][1000 genomes]
rs7927579	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs7932338	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7936514	0.87[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs9326314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9888232	0.83[CHB][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv2761703	chr11:101406049-101439667	Enhancers Flanking Active TSS Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv2754308	chr11:101409790-101502790	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv898331	chr11:101436689-101492630	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101426400-101447600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr11:101434600-101438000	Weak transcription	NHLF	lung
3	chr11:101437000-101444400	Weak transcription	NHDF-Ad	bronchial
4	chr11:101437400-101438000	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr11:101437400-101438000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr11:101437400-101438000	Weak transcription	Fetal Lung	lung
7	chr11:101437400-101438200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:101437400-101438400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr11:101437400-101438400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr11:101437400-101438400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:101437400-101438400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr11:101437400-101438600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:101437600-101438000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:101437600-101438000	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr11:101437600-101438000	Active TSS	iPS-18 Cell Line	embryonic stem cell
16	chr11:101437600-101438200	Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr11:101437800-101438400	Enhancers	Fetal Stomach	stomach

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