Variant report

Variant	rs7936514
Chromosome Location	chr11:101433353-101433354
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10791495	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs10791496	0.82[CHB][hapmap]
rs10791504	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs10895135	0.87[CHB][hapmap]
rs10895136	0.87[ASN][1000 genomes]
rs10895137	0.87[ASN][1000 genomes]
rs10895140	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs10895141	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs10895142	0.87[CHB][hapmap]
rs11224829	0.87[CHB][hapmap]
rs11224838	0.88[ASN][1000 genomes]
rs11224840	0.88[ASN][1000 genomes]
rs11224843	0.89[ASN][1000 genomes]
rs11224852	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs11224853	0.87[CHB][hapmap]
rs11224855	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11224878	0.96[ASN][1000 genomes]
rs11224881	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs12222977	0.89[ASN][1000 genomes]
rs12223895	0.89[ASN][1000 genomes]
rs12226165	0.83[CHB][hapmap]
rs12801488	0.87[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs17134809	0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs28497867	0.97[ASN][1000 genomes]
rs4237602	0.90[ASN][1000 genomes]
rs4237603	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4301757	0.90[ASN][1000 genomes]
rs4326755	0.95[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs4331058	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs4353244	0.88[ASN][1000 genomes]
rs4408275	0.95[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs4462305	0.82[JPT][hapmap]
rs4469858	0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs4492784	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs4501953	0.97[ASN][1000 genomes]
rs4503499	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs4531428	0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs4608051	0.87[ASN][1000 genomes]
rs4754012	0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs4754766	0.87[ASN][1000 genomes]
rs4754774	0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs4754775	0.89[ASN][1000 genomes]
rs4754776	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs4754777	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4754779	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs59742038	0.95[ASN][1000 genomes]
rs60088687	0.96[ASN][1000 genomes]
rs6590885	0.87[ASN][1000 genomes]
rs6590890	0.83[EUR][1000 genomes]
rs6590891	0.83[EUR][1000 genomes]
rs67417149	0.88[ASN][1000 genomes]
rs67968022	0.89[ASN][1000 genomes]
rs68067131	0.89[ASN][1000 genomes]
rs7113536	0.88[ASN][1000 genomes]
rs7124721	0.83[EUR][1000 genomes]
rs7927579	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7932338	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs9326314	0.87[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs9888232	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv556134	chr11:101398450-101436689	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv556135	chr11:101399510-101436689	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv519281	chr11:101404645-101436689	Weak transcription Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv468852	chr11:101404645-101436689	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
8	nsv556136	chr11:101404645-101436689	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv556137	chr11:101405218-101436689	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
10	esv2761703	chr11:101406049-101439667	Enhancers Flanking Active TSS Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
11	nsv556138	chr11:101409478-101436997	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
12	esv2754308	chr11:101409790-101502790	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101416400-101437400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:101424400-101437200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:101426400-101447600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:101427400-101433600	Weak transcription	NHLF	lung
5	chr11:101429600-101437400	Weak transcription	Ovary	ovary
6	chr11:101431400-101437400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:101431800-101433400	Weak transcription	NHDF-Ad	bronchial

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