Variant report

Variant	rs4408275
Chromosome Location	chr11:101446259-101446260
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10791495	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs10791496	0.87[CHB][hapmap]
rs10791504	0.83[CHB][hapmap]
rs10791507	0.87[ASN][1000 genomes]
rs10895135	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs10895136	0.80[ASN][1000 genomes]
rs10895137	0.80[ASN][1000 genomes]
rs10895140	0.82[CHB][hapmap]
rs10895141	0.83[CHB][hapmap]
rs10895142	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs11224829	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs11224838	0.82[ASN][1000 genomes]
rs11224840	0.82[ASN][1000 genomes]
rs11224843	0.83[ASN][1000 genomes]
rs11224852	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs11224853	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs11224855	1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs11224878	0.92[ASN][1000 genomes]
rs11224881	0.91[CHB][hapmap]
rs12222977	0.83[ASN][1000 genomes]
rs12223895	0.82[ASN][1000 genomes]
rs12226165	0.86[JPT][hapmap]
rs12801488	0.83[CHB][hapmap]
rs17134809	1.00[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs1938867	0.87[EUR][1000 genomes]
rs28497867	0.90[ASN][1000 genomes]
rs4237602	0.84[ASN][1000 genomes]
rs4237603	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs4301757	0.84[ASN][1000 genomes]
rs4326755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4331057	0.87[CHB][hapmap]
rs4331058	0.87[CHB][hapmap]
rs4353244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4462305	0.87[CHB][hapmap]
rs4469858	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs4492784	0.87[CHB][hapmap]
rs4501953	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4503499	0.83[CHB][hapmap]
rs4531428	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs4556510	0.82[YRI][hapmap]
rs4603271	0.81[EUR][1000 genomes]
rs4608051	0.80[ASN][1000 genomes]
rs4754012	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4754766	0.80[ASN][1000 genomes]
rs4754774	1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs4754775	0.83[ASN][1000 genomes]
rs4754776	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs4754777	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs4754779	0.83[CHB][hapmap]
rs59742038	0.91[ASN][1000 genomes]
rs60088687	0.90[ASN][1000 genomes]
rs6590885	0.80[ASN][1000 genomes]
rs67417149	0.84[ASN][1000 genomes]
rs67968022	0.83[ASN][1000 genomes]
rs68067131	0.83[ASN][1000 genomes]
rs7113536	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120953	0.83[YRI][hapmap]
rs7927579	1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs7932338	0.82[CHB][hapmap]
rs7936514	0.95[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs9326314	0.83[CHB][hapmap]
rs9888232	1.00[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv2754308	chr11:101409790-101502790	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv898331	chr11:101436689-101492630	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv3489634	chr11:101443892-101446490	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3387585	chr11:101445853-101446371	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101426400-101447600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr11:101444400-101449200	Enhancers	NHDF-Ad	bronchial
3	chr11:101445400-101447800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr11:101445800-101446600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:101445800-101447000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr11:101445800-101447400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:101446000-101446800	Enhancers	Fetal Lung	lung
8	chr11:101446000-101448200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr11:101446000-101448600	Enhancers	NHLF	lung

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