Variant report

Variant	rs10791507
Chromosome Location	chr11:101474731-101474732
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10791495	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.84[AMR][1000 genomes]
rs10791496	0.82[CHB][hapmap]
rs10791504	0.87[CHB][hapmap]
rs10895135	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs10895140	0.86[CHB][hapmap]
rs10895141	0.87[CHB][hapmap]
rs10895142	0.87[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs11224829	0.87[CHB][hapmap];0.81[CHD][hapmap]
rs11224852	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs11224853	0.87[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs11224855	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs11224881	0.86[CHB][hapmap];0.80[CHD][hapmap]
rs11224893	0.80[ASN][1000 genomes]
rs12226165	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs12787882	0.83[ASN][1000 genomes]
rs12801488	0.87[CHB][hapmap]
rs17134809	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs4237603	0.95[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap]
rs4326755	0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs4331057	0.82[CHB][hapmap]
rs4331058	0.82[CHB][hapmap]
rs4353244	0.87[ASN][1000 genomes]
rs4408275	0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs4462305	0.82[CHB][hapmap]
rs4469858	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs4492784	0.82[CHB][hapmap]
rs4503499	0.87[CHB][hapmap]
rs4531428	0.95[CHB][hapmap];0.81[CHD][hapmap];0.81[JPT][hapmap]
rs4603271	0.86[ASN][1000 genomes]
rs4614409	0.86[ASN][1000 genomes]
rs4754012	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs4754774	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs4754776	0.91[CHB][hapmap]
rs4754777	0.95[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap]
rs4754779	0.87[CHB][hapmap]
rs7113536	0.87[ASN][1000 genomes]
rs7927579	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs7932338	0.86[CHB][hapmap]
rs7936514	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs9326314	0.87[CHB][hapmap]
rs9888232	0.95[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv2754308	chr11:101409790-101502790	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv898331	chr11:101436689-101492630	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv530645	chr11:101451416-101778666	Bivalent/Poised TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10791507	DYNC2H1	cis	cerebellum	SCAN
rs10791507	CNTN5	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101472800-101475000	Weak transcription	NHDF-Ad	bronchial

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