Variant report

Variant	rs11224881
Chromosome Location	chr11:101450627-101450628
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10791495	0.82[CHB][hapmap]
rs10895136	0.94[EUR][1000 genomes]
rs10895137	0.95[EUR][1000 genomes]
rs11224838	0.95[EUR][1000 genomes]
rs11224840	0.95[EUR][1000 genomes]
rs11224843	0.93[EUR][1000 genomes]
rs11224855	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[AFR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11224878	0.95[AFR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11224891	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11224893	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12222977	0.93[EUR][1000 genomes]
rs12223895	0.90[EUR][1000 genomes]
rs17134809	0.94[CEU][hapmap];0.91[CHB][hapmap];0.94[EUR][1000 genomes]
rs1938867	0.88[ASN][1000 genomes]
rs28497867	0.84[AFR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34470061	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4237602	0.96[EUR][1000 genomes]
rs4237603	0.92[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.96[GIH][hapmap];0.87[LWK][hapmap];0.92[MKK][hapmap];0.96[TSI][hapmap];0.84[YRI][hapmap];0.96[EUR][1000 genomes]
rs4301757	0.96[EUR][1000 genomes]
rs4326755	0.91[CHB][hapmap];0.82[CHD][hapmap]
rs4408275	0.91[CHB][hapmap]
rs4469858	0.94[CEU][hapmap];0.91[CHB][hapmap];0.89[GIH][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes]
rs4501953	0.85[ASN][1000 genomes]
rs4531428	0.94[CEU][hapmap];0.91[CHB][hapmap];0.93[GIH][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes]
rs4608051	0.95[EUR][1000 genomes]
rs4754012	0.94[CEU][hapmap];0.91[CHB][hapmap];0.94[EUR][1000 genomes]
rs4754766	0.95[EUR][1000 genomes]
rs4754774	0.94[CEU][hapmap];0.91[CHB][hapmap];0.84[YRI][hapmap];0.92[EUR][1000 genomes]
rs4754775	0.93[EUR][1000 genomes]
rs4754776	0.86[CHB][hapmap]
rs4754777	0.92[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.96[GIH][hapmap];0.89[LWK][hapmap];0.95[MKK][hapmap];0.96[TSI][hapmap];0.87[YRI][hapmap];0.85[AFR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4754784	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4754785	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59742038	0.90[AFR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60088687	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6590885	0.95[EUR][1000 genomes]
rs6590890	0.84[ASN][1000 genomes]
rs6590891	0.87[ASN][1000 genomes]
rs67417149	0.93[EUR][1000 genomes]
rs67939495	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67968022	0.93[EUR][1000 genomes]
rs68067131	0.93[EUR][1000 genomes]
rs7124721	0.87[ASN][1000 genomes]
rs72976340	0.85[ASN][1000 genomes]
rs7927579	0.94[CEU][hapmap];0.90[CHB][hapmap];0.87[YRI][hapmap];0.96[EUR][1000 genomes]
rs7936514	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs9888232	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[YRI][hapmap];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv2754308	chr11:101409790-101502790	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv898331	chr11:101436689-101492630	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101446800-101452800	Weak transcription	Ovary	ovary
2	chr11:101447800-101452400	Weak transcription	Colon Smooth Muscle	Colon
3	chr11:101448600-101452400	Weak transcription	NHLF	lung
4	chr11:101450200-101451000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
5	chr11:101450600-101450800	Weak transcription	NHDF-Ad	bronchial
6	chr11:101450600-101451800	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links