Variant report

Variant	rs67939495
Chromosome Location	chr11:101490128-101490129
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10895136	0.85[EUR][1000 genomes]
rs10895137	0.86[EUR][1000 genomes]
rs11224838	0.86[EUR][1000 genomes]
rs11224840	0.86[EUR][1000 genomes]
rs11224843	0.84[EUR][1000 genomes]
rs11224855	0.88[EUR][1000 genomes]
rs11224878	0.89[EUR][1000 genomes]
rs11224881	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11224891	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11224893	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12222977	0.84[EUR][1000 genomes]
rs12223895	0.81[EUR][1000 genomes]
rs12787882	0.87[EUR][1000 genomes]
rs17134809	0.85[EUR][1000 genomes]
rs1938867	0.92[ASN][1000 genomes]
rs28497867	0.88[EUR][1000 genomes]
rs34470061	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36144256	0.82[EUR][1000 genomes]
rs4237602	0.87[EUR][1000 genomes]
rs4237603	0.87[EUR][1000 genomes]
rs4301757	0.87[EUR][1000 genomes]
rs4469858	0.84[EUR][1000 genomes]
rs4531428	0.84[EUR][1000 genomes]
rs4608051	0.86[EUR][1000 genomes]
rs4614409	0.87[EUR][1000 genomes]
rs4754012	0.84[EUR][1000 genomes]
rs4754766	0.86[EUR][1000 genomes]
rs4754774	0.83[EUR][1000 genomes]
rs4754775	0.84[EUR][1000 genomes]
rs4754777	0.88[EUR][1000 genomes]
rs4754784	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4754785	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59742038	0.87[EUR][1000 genomes]
rs60088687	0.88[EUR][1000 genomes]
rs6590885	0.86[EUR][1000 genomes]
rs6590890	0.88[ASN][1000 genomes]
rs6590891	0.91[ASN][1000 genomes]
rs67417149	0.84[EUR][1000 genomes]
rs67968022	0.84[EUR][1000 genomes]
rs68067131	0.84[EUR][1000 genomes]
rs7124721	0.91[ASN][1000 genomes]
rs7927579	0.87[EUR][1000 genomes]
rs9888232	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	esv2754308	chr11:101409790-101502790	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv898331	chr11:101436689-101492630	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv530645	chr11:101451416-101778666	Bivalent/Poised TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101487200-101490400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr11:101488200-101490400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:101489600-101490200	Enhancers	NHEK	skin

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