Variant report

Variant	rs1938867
Chromosome Location	chr11:101472289-101472290
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10791495	0.82[CHB][hapmap]
rs11224855	0.90[CHB][hapmap]
rs11224881	1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs11224891	0.98[ASN][1000 genomes]
rs11224893	0.96[ASN][1000 genomes]
rs17134809	0.91[CHB][hapmap]
rs34470061	0.95[ASN][1000 genomes]
rs4237603	0.91[CHB][hapmap]
rs4326755	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs4353244	0.87[EUR][1000 genomes]
rs4408275	0.96[CEU][hapmap];0.91[CHB][hapmap];0.87[EUR][1000 genomes]
rs4469858	0.91[CHB][hapmap]
rs4501953	0.87[EUR][1000 genomes]
rs4531428	0.91[CHB][hapmap]
rs4603271	0.84[EUR][1000 genomes]
rs4754012	0.91[CHB][hapmap]
rs4754774	0.91[CHB][hapmap]
rs4754776	0.86[CHB][hapmap]
rs4754777	0.91[CHB][hapmap]
rs4754784	0.97[ASN][1000 genomes]
rs4754785	0.92[ASN][1000 genomes]
rs6590890	0.96[ASN][1000 genomes]
rs6590891	0.99[ASN][1000 genomes]
rs67939495	0.92[ASN][1000 genomes]
rs7113536	0.87[EUR][1000 genomes]
rs7124721	0.99[ASN][1000 genomes]
rs7927579	0.90[CHB][hapmap]
rs7936514	0.86[CHB][hapmap]
rs9888232	0.91[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv2754308	chr11:101409790-101502790	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv898331	chr11:101436689-101492630	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv530645	chr11:101451416-101778666	Bivalent/Poised TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101471800-101472800	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links