Variant report

Variant	rs6591066
Chromosome Location	chr11:104034160-104034161
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17102105	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs361285	1.00[AMR][1000 genomes]
rs361297	1.00[AMR][1000 genomes]
rs361298	1.00[AMR][1000 genomes]
rs361299	1.00[AMR][1000 genomes]
rs6591067	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7925703	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7935143	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7938077	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7951704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7951828	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760322	chr11:103760085-104374141	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1051448	chr11:103864766-104274112	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
3	nsv541157	chr11:103864766-104274112	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1043976	chr11:103881236-104526403	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1040367	chr11:103956747-104440470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv430426	chr11:103978540-104099790	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104030800-104035400	Active TSS	Ovary	ovary
2	chr11:104032400-104035400	Active TSS	Aorta	Aorta
3	chr11:104032800-104034400	Active TSS	Brain Germinal Matrix	brain
4	chr11:104032800-104035200	Active TSS	A549	lung
5	chr11:104033000-104034200	Enhancers	Placenta Amnion	Placenta Amnion
6	chr11:104033200-104035400	Active TSS	Right Atrium	heart
7	chr11:104033400-104034200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:104033400-104034200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:104033400-104034600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
10	chr11:104033400-104034800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr11:104033400-104034800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:104033400-104034800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
13	chr11:104033400-104035200	Active TSS	Rectal Mucosa Donor 29	rectum
14	chr11:104033400-104035400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:104033400-104035400	Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr11:104033400-104035400	Active TSS	Fetal Kidney	kidney
17	chr11:104033400-104035400	Active TSS	Pancreatic Islets	Pancreatic Islet
18	chr11:104033400-104035400	Active TSS	Right Ventricle	heart
19	chr11:104033400-104035800	Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr11:104033600-104034200	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr11:104033600-104034200	Enhancers	Primary B cells from peripheral blood	blood
22	chr11:104033600-104034200	Flanking Active TSS	Fetal Muscle Leg	muscle
23	chr11:104033600-104034200	Bivalent Enhancer	Fetal Thymus	thymus
24	chr11:104033600-104034200	Enhancers	Stomach Mucosa	stomach
25	chr11:104033600-104034400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr11:104033600-104034400	Flanking Active TSS	Duodenum Mucosa	Duodenum
27	chr11:104033600-104034400	Bivalent/Poised TSS	NHDF-Ad	bronchial
28	chr11:104033600-104034600	Flanking Active TSS	HUVEC	blood vessel
29	chr11:104033600-104034800	Flanking Active TSS	Primary hematopoietic stem cells	blood
30	chr11:104033600-104034800	Enhancers	Small Intestine	intestine
31	chr11:104033600-104035000	Flanking Active TSS	Adipose Nuclei	Adipose
32	chr11:104033600-104035200	Active TSS	Psoas Muscle	Psoas
33	chr11:104033600-104035200	Active TSS	Rectal Smooth Muscle	rectum
34	chr11:104033600-104035400	Active TSS	Breast Myoepithelial Primary Cells	Breast
35	chr11:104033600-104035400	Active TSS	Brain Hippocampus Middle	brain
36	chr11:104033600-104035400	Active TSS	Fetal Stomach	stomach
37	chr11:104033600-104035400	Active TSS	Pancreas	Pancrea
38	chr11:104033600-104035600	Active TSS	HUES64 Cell Line	embryonic stem cell
39	chr11:104033600-104035800	Active TSS	iPS-15b Cell Line	embryonic stem cell
40	chr11:104033600-104036000	Active TSS	ES-I3 Cell Line	embryonic stem cell
41	chr11:104033600-104036000	Active TSS	HUES6 Cell Line	embryonic stem cell
42	chr11:104033800-104034200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr11:104033800-104034200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:104033800-104034200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr11:104033800-104034200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr11:104033800-104034200	Active TSS	Brain Cingulate Gyrus	brain
47	chr11:104033800-104034200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
48	chr11:104033800-104034200	Enhancers	Esophagus	oesophagus
49	chr11:104033800-104034200	Enhancers	Lung	lung
50	chr11:104033800-104034200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle

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