Variant report

Variant	rs7951704
Chromosome Location	chr11:104034705-104034706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17102105	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs361285	1.00[AMR][1000 genomes]
rs361297	1.00[AMR][1000 genomes]
rs361298	1.00[AMR][1000 genomes]
rs361299	1.00[AMR][1000 genomes]
rs6591066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6591067	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7925703	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7935143	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7938077	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7951828	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760322	chr11:103760085-104374141	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1051448	chr11:103864766-104274112	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
3	nsv541157	chr11:103864766-104274112	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1043976	chr11:103881236-104526403	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1040367	chr11:103956747-104440470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv430426	chr11:103978540-104099790	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104030800-104035400	Active TSS	Ovary	ovary
2	chr11:104032400-104035400	Active TSS	Aorta	Aorta
3	chr11:104032800-104035200	Active TSS	A549	lung
4	chr11:104033200-104035400	Active TSS	Right Atrium	heart
5	chr11:104033400-104034800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:104033400-104034800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:104033400-104034800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
8	chr11:104033400-104035200	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr11:104033400-104035400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:104033400-104035400	Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr11:104033400-104035400	Active TSS	Fetal Kidney	kidney
12	chr11:104033400-104035400	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr11:104033400-104035400	Active TSS	Right Ventricle	heart
14	chr11:104033400-104035800	Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr11:104033600-104034800	Flanking Active TSS	Primary hematopoietic stem cells	blood
16	chr11:104033600-104034800	Enhancers	Small Intestine	intestine
17	chr11:104033600-104035000	Flanking Active TSS	Adipose Nuclei	Adipose
18	chr11:104033600-104035200	Active TSS	Psoas Muscle	Psoas
19	chr11:104033600-104035200	Active TSS	Rectal Smooth Muscle	rectum
20	chr11:104033600-104035400	Active TSS	Breast Myoepithelial Primary Cells	Breast
21	chr11:104033600-104035400	Active TSS	Brain Hippocampus Middle	brain
22	chr11:104033600-104035400	Active TSS	Fetal Stomach	stomach
23	chr11:104033600-104035400	Active TSS	Pancreas	Pancrea
24	chr11:104033600-104035600	Active TSS	HUES64 Cell Line	embryonic stem cell
25	chr11:104033600-104035800	Active TSS	iPS-15b Cell Line	embryonic stem cell
26	chr11:104033600-104036000	Active TSS	ES-I3 Cell Line	embryonic stem cell
27	chr11:104033600-104036000	Active TSS	HUES6 Cell Line	embryonic stem cell
28	chr11:104033800-104034800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr11:104033800-104034800	Active TSS	Stomach Smooth Muscle	stomach
30	chr11:104033800-104035000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr11:104033800-104035000	Bivalent/Poised TSS	Thymus	Thymus
32	chr11:104033800-104035200	Active TSS	H1 Cell Line	embryonic stem cell
33	chr11:104033800-104035200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
34	chr11:104033800-104035200	Active TSS	Fetal Heart	heart
35	chr11:104033800-104035400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr11:104033800-104035400	Active TSS	Muscle Satellite Cultured Cells	--
37	chr11:104033800-104035400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr11:104033800-104035400	Active TSS	Brain Inferior Temporal Lobe	brain
39	chr11:104033800-104035600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:104034000-104034800	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
41	chr11:104034000-104034800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr11:104034000-104035000	Bivalent/Poised TSS	Primary T cells fromperipheralblood	blood
43	chr11:104034000-104035000	Active TSS	Fetal Lung	lung
44	chr11:104034000-104035000	Active TSS	Skeletal Muscle Female	skeletal muscle
45	chr11:104034000-104035200	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
46	chr11:104034000-104035200	Active TSS	Duodenum Smooth Muscle	Duodenum
47	chr11:104034000-104035200	Bivalent/Poised TSS	Fetal Brain Female	brain
48	chr11:104034000-104035200	Active TSS	Gastric	stomach
49	chr11:104034000-104035200	Active TSS	Left Ventricle	heart
50	chr11:104034000-104035200	Active TSS	NHLF	lung

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