Variant report

Variant	rs6592466
Chromosome Location	chr11:71974246-71974247
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs526344	0.93[CEU][hapmap]
rs628542	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6592464	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs661514	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs677685	0.93[CEU][hapmap]
rs7114916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71973600-71975200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:71973800-71974400	Enhancers	Hela-S3	cervix
3	chr11:71973800-71974600	Enhancers	A549	lung
4	chr11:71974000-71974800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr11:71974200-71974400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr11:71974200-71974600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:71974200-71974600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:71974200-71974600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:71974200-71974600	Enhancers	K562	blood
10	chr11:71974200-71974600	Enhancers	NH-A	brain
11	chr11:71974200-71974600	Enhancers	NHDF-Ad	bronchial
12	chr11:71974200-71974600	Enhancers	Osteobl	bone
13	chr11:71974200-71974800	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr11:71974200-71975000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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