Variant report

Variant	rs677685
Chromosome Location	chr11:71956899-71956900
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs3741163	0.87[CHB][hapmap]
rs526344	0.86[CEU][hapmap];0.91[CHB][hapmap]
rs628542	0.89[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6592464	0.92[CEU][hapmap]
rs6592466	0.93[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv897909	chr11:71927468-71960554	Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71954400-71957000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
2	chr11:71956000-71957000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
3	chr11:71956600-71957000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
4	chr11:71956600-71957000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:71956600-71957400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:71956800-71957000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
7	chr11:71956800-71957200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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