Variant report

Variant	rs6592674
Chromosome Location	chr11:76572165-76572166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:76571922..76572822-chr3:53915731..53916676,2	Hela-S3	cervix:
2	chr11:76571627..76572312-chr21:38444698..38445520,2	Hela-S3	cervix:
3	chr11:76494290..76496487-chr11:76570623..76573983,3	K562	blood:
4	chr11:76570713..76572261-chr3:63997664..63999905,2	MCF-7	breast:
5	chr1:145382382..145383302-chr11:76571871..76572392,2	Hela-S3	cervix:
6	chr11:76494634..76496487-chr11:76571954..76573983,2	K562	blood:
7	chr11:76518255..76520298-chr11:76572077..76574099,2	MCF-7	breast:
8	chr11:76572033..76573860-chr11:76603838..76606079,2	MCF-7	breast:
9	chr11:68038771..68039582-chr11:76571449..76572189,2	Hela-S3	cervix:
10	chr11:76571659..76572372-chr6:27114841..27115623,2	Hela-S3	cervix:
11	chr11:76571264..76572219-chrX:44732019..44732938,2	NB4	blood:
12	chr11:76493101..76495858-chr11:76570734..76573156,2	MCF-7	breast:
13	chr11:76571606..76572372-chrX:47003865..47004500,2	Hela-S3	cervix:
14	chr11:65189847..65190511-chr11:76571484..76572370,3	Hela-S3	cervix:
15	chr11:76478547..76482353-chr11:76570414..76574348,5	MCF-7	breast:
16	chr11:76571959..76572597-chr9:140082562..140083184,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000222888	Chromatin interaction
ENSG00000185808	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000171067	Chromatin interaction
ENSG00000113812	Chromatin interaction
ENSG00000255100	Chromatin interaction
ENSG00000182704	Chromatin interaction
ENSG00000233396	Chromatin interaction
ENSG00000176101	Chromatin interaction
ENSG00000201558	Chromatin interaction
ENSG00000245532	Chromatin interaction
ENSG00000147123	Chromatin interaction
ENSG00000254632	Chromatin interaction
ENSG00000176248	Chromatin interaction
ENSG00000147050	Chromatin interaction
ENSG00000163636	Chromatin interaction
ENSG00000182872	Chromatin interaction

rs_ID	r²[population]
rs7124939	0.81[ASW][hapmap];0.94[YRI][hapmap]

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76571200-76572400	Active TSS	Rectal Mucosa Donor 29	rectum
2	chr11:76571200-76572600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr11:76571200-76572600	Active TSS	Brain Anterior Caudate	brain
4	chr11:76571200-76572600	Active TSS	Osteobl	bone
5	chr11:76571400-76572200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr11:76571400-76572400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:76571400-76572400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:76571400-76572400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:76571400-76572400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
10	chr11:76571400-76572400	Active TSS	Primary T killer memory cells from peripheral blood	blood
11	chr11:76571400-76572400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:76571400-76572400	Active TSS	Brain Cingulate Gyrus	brain
13	chr11:76571400-76572400	Active TSS	Colonic Mucosa	Colon
14	chr11:76571400-76572400	Active TSS	Fetal Brain Male	brain
15	chr11:76571400-76572400	Active TSS	Fetal Brain Female	brain
16	chr11:76571400-76572400	Active TSS	Rectal Mucosa Donor 31	rectum
17	chr11:76571400-76572400	Active TSS	Right Ventricle	heart
18	chr11:76571400-76572400	Active TSS	HSMMtube	muscle
19	chr11:76571400-76572600	Active TSS	H9 Cell Line	embryonic stem cell
20	chr11:76571400-76572600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:76571400-76572600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr11:76571400-76572600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:76571400-76572600	Active TSS	Aorta	Aorta
24	chr11:76571400-76572600	Active TSS	Brain Angular Gyrus	brain
25	chr11:76571400-76572600	Active TSS	Brain Inferior Temporal Lobe	brain
26	chr11:76571400-76572600	Active TSS	Brain Substantia Nigra	brain
27	chr11:76571400-76572600	Active TSS	Colon Smooth Muscle	Colon
28	chr11:76571400-76572600	Active TSS	Duodenum Smooth Muscle	Duodenum
29	chr11:76571400-76572600	Active TSS	Esophagus	oesophagus
30	chr11:76571400-76572600	Active TSS	Fetal Kidney	kidney
31	chr11:76571400-76572600	Active TSS	Left Ventricle	heart
32	chr11:76571400-76572600	Active TSS	Ovary	ovary
33	chr11:76571400-76573000	Flanking Active TSS	Primary hematopoietic stem cells	blood
34	chr11:76571400-76573000	Active TSS	Pancreatic Islets	Pancreatic Islet
35	chr11:76571400-76573000	Active TSS	Psoas Muscle	Psoas
36	chr11:76571400-76573000	Active TSS	HSMM	muscle
37	chr11:76571400-76573400	Active TSS	iPS-20b Cell Line	embryonic stem cell
38	chr11:76571600-76572200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr11:76571600-76572200	Active TSS	Primary T cells from cord blood	blood
40	chr11:76571600-76572200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
41	chr11:76571600-76572200	Active TSS	Fetal Thymus	thymus
42	chr11:76571600-76572400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr11:76571600-76572400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr11:76571600-76572400	Active TSS	Primary T helper naive cells from peripheral blood	blood
45	chr11:76571600-76572400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
46	chr11:76571600-76572400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr11:76571600-76572400	Bivalent/Poised TSS	Brain Germinal Matrix	brain
48	chr11:76571600-76572400	Active TSS	Duodenum Mucosa	Duodenum
49	chr11:76571600-76572400	Active TSS	Fetal Intestine Small	intestine
50	chr11:76571600-76572400	Active TSS	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links