Variant report

Variant	rs7124939
Chromosome Location	chr11:76728268-76728269
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76726648..76728286-chr11:76730061..76731571,2	MCF-7	breast:
2	chr11:76726745..76728843-chr11:76732753..76735602,2	K562	blood:
3	chr11:76727454..76729848-chr11:76730170..76732730,2	K562	blood:

Variant related genes	Relation type
ENSG00000078124	Chromatin interaction

rs_ID	r²[population]
rs1062170	1.00[CHB][hapmap]
rs6592674	0.81[ASW][hapmap];0.94[YRI][hapmap]
rs7936973	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7948974	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76675000-76729600	Weak transcription	Brain Angular Gyrus	brain
2	chr11:76683000-76736400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:76683200-76729200	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:76689200-76734600	Weak transcription	Liver	Liver
5	chr11:76689600-76737000	Weak transcription	Pancreas	Pancrea
6	chr11:76689800-76731400	Weak transcription	Ovary	ovary
7	chr11:76690000-76735800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr11:76690200-76729000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:76690200-76736800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr11:76690400-76734600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr11:76693800-76734800	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr11:76694000-76738600	Weak transcription	HSMMtube	muscle
13	chr11:76696200-76738000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr11:76699800-76731200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr11:76700000-76729800	Weak transcription	Left Ventricle	heart
16	chr11:76701200-76738400	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr11:76702600-76736000	Weak transcription	Brain Substantia Nigra	brain
18	chr11:76705600-76735600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr11:76707200-76730800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr11:76707600-76730400	Weak transcription	Fetal Brain Male	brain
21	chr11:76709600-76732400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:76709600-76733200	Weak transcription	Fetal Lung	lung
23	chr11:76709800-76731200	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr11:76711200-76734600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr11:76712200-76733600	Weak transcription	Psoas Muscle	Psoas
26	chr11:76716200-76734800	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr11:76716400-76739800	Weak transcription	Colonic Mucosa	Colon
28	chr11:76717200-76731200	Weak transcription	HSMM	muscle
29	chr11:76718000-76733600	Weak transcription	Right Ventricle	heart
30	chr11:76718200-76731200	Weak transcription	Primary T cells from cord blood	blood
31	chr11:76719200-76730000	Weak transcription	Primary hematopoietic stem cells	blood
32	chr11:76719800-76731800	Weak transcription	Brain Germinal Matrix	brain
33	chr11:76720000-76738000	Weak transcription	Fetal Muscle Leg	muscle
34	chr11:76720400-76731600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr11:76720400-76735600	Weak transcription	Primary B cells from cord blood	blood
36	chr11:76720400-76738000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr11:76720600-76730600	Weak transcription	HMEC	breast
38	chr11:76720600-76731400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr11:76720800-76730800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:76720800-76732400	Weak transcription	Fetal Stomach	stomach
41	chr11:76720800-76736400	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr11:76720800-76737200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr11:76721000-76729400	Weak transcription	Brain Cingulate Gyrus	brain
44	chr11:76721600-76731200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr11:76722600-76728400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr11:76722600-76729200	Weak transcription	Duodenum Mucosa	Duodenum
47	chr11:76722600-76730800	Weak transcription	NHEK	skin
48	chr11:76722600-76731200	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr11:76722600-76736600	Weak transcription	Stomach Smooth Muscle	stomach
50	chr11:76722600-76736600	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links