Variant report

Variant	rs6594698
Chromosome Location	chr5:112627736-112627737
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112608585..112610553-chr5:112626855..112628809,2	MCF-7	breast:
2	chr5:112616654..112618757-chr5:112626610..112628435,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10434754	0.93[EUR][1000 genomes]
rs1157696	0.87[EUR][1000 genomes]
rs13159509	0.88[EUR][1000 genomes]
rs13164135	0.87[EUR][1000 genomes]
rs13164326	0.93[EUR][1000 genomes]
rs13170435	0.93[EUR][1000 genomes]
rs13174151	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13177853	0.93[EUR][1000 genomes]
rs13183383	0.93[EUR][1000 genomes]
rs13184538	0.93[EUR][1000 genomes]
rs17325307	0.88[EUR][1000 genomes]
rs17325503	0.87[EUR][1000 genomes]
rs17325825	0.93[EUR][1000 genomes]
rs1838206	0.90[EUR][1000 genomes]
rs1922678	0.95[EUR][1000 genomes]
rs1922679	0.95[EUR][1000 genomes]
rs34558181	0.93[EUR][1000 genomes]
rs35359071	0.88[EUR][1000 genomes]
rs58268366	0.93[EUR][1000 genomes]
rs71577442	0.93[EUR][1000 genomes]
rs7701895	0.87[EUR][1000 genomes]
rs7709646	0.91[EUR][1000 genomes]
rs7720414	0.87[EUR][1000 genomes]
rs7727056	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7727501	0.93[EUR][1000 genomes]
rs7737512	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv882718	chr5:112519471-112674376	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv882719	chr5:112568212-112706511	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1024747	chr5:112592710-112679373	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1018078	chr5:112615220-112657404	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv949165	chr5:112615626-112730216	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112608000-112628200	Weak transcription	HMEC	breast
2	chr5:112610000-112628200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:112611000-112628200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:112617800-112628600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr5:112618400-112628000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:112618400-112628200	Weak transcription	Fetal Kidney	kidney
7	chr5:112618400-112628200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr5:112618400-112628400	Weak transcription	Fetal Stomach	stomach
9	chr5:112619000-112628600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr5:112619000-112628800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr5:112620000-112628200	Weak transcription	Brain Anterior Caudate	brain
12	chr5:112620000-112628200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr5:112624000-112628000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr5:112624000-112628600	Weak transcription	Esophagus	oesophagus
15	chr5:112624000-112628800	Weak transcription	Gastric	stomach
16	chr5:112625200-112628200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr5:112625400-112627800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr5:112625400-112628800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr5:112626000-112628200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr5:112626400-112628000	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr5:112626400-112628200	Enhancers	HUVEC	blood vessel
22	chr5:112626800-112628400	Enhancers	Liver	Liver
23	chr5:112626800-112628600	Enhancers	Fetal Heart	heart
24	chr5:112626800-112631400	Active TSS	Ovary	ovary
25	chr5:112627000-112628400	Enhancers	Fetal Muscle Leg	muscle
26	chr5:112627000-112629000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr5:112627200-112628000	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr5:112627200-112628000	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr5:112627200-112628000	Weak transcription	Adipose Nuclei	Adipose
30	chr5:112627200-112628200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr5:112627200-112628200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr5:112627200-112628200	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr5:112627200-112628200	Weak transcription	NHEK	skin
34	chr5:112627200-112628600	Weak transcription	Lung	lung
35	chr5:112627200-112628800	Weak transcription	Aorta	Aorta
36	chr5:112627200-112631200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr5:112627400-112627800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr5:112627400-112628000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr5:112627400-112628000	Weak transcription	Right Ventricle	heart
40	chr5:112627400-112628200	Weak transcription	Right Atrium	heart
41	chr5:112627400-112628400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr5:112627400-112628400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr5:112627400-112631000	Active TSS	Psoas Muscle	Psoas
44	chr5:112627600-112628000	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr5:112627600-112628000	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr5:112627600-112628000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr5:112627600-112628000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr5:112627600-112628000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr5:112627600-112628000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr5:112627600-112628000	Weak transcription	Left Ventricle	heart

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