Variant report

Variant	rs35359071
Chromosome Location	chr5:112670518-112670519
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:112670295..112671013-chr5:112846037..112846592,2	MCF-7	breast:
2	chr5:112570824..112573255-chr5:112670003..112671538,2	MCF-7	breast:
3	chr5:112670061..112672629-chr5:112676189..112678751,2	K562	blood:

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10038521	0.95[ASN][1000 genomes]
rs10051115	0.95[ASN][1000 genomes]
rs10053341	0.95[ASN][1000 genomes]
rs10061462	0.95[ASN][1000 genomes]
rs10434754	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10477490	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11241213	0.83[ASN][1000 genomes]
rs1157696	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13154300	1.00[ASN][1000 genomes]
rs13159509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13164135	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13164326	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13170435	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13171482	0.95[ASN][1000 genomes]
rs13171630	0.85[ASN][1000 genomes]
rs13174075	0.95[ASN][1000 genomes]
rs13174151	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13174206	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13177853	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13180516	1.00[ASN][1000 genomes]
rs13180522	0.95[ASN][1000 genomes]
rs13181534	0.95[ASN][1000 genomes]
rs13181732	1.00[ASN][1000 genomes]
rs13181944	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13183383	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13184538	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13187823	1.00[ASN][1000 genomes]
rs13189050	0.95[ASN][1000 genomes]
rs13189910	0.95[ASN][1000 genomes]
rs13436825	0.86[ASN][1000 genomes]
rs1602862	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17325307	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17325503	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17325825	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17327964	1.00[ASN][1000 genomes]
rs17388260	1.00[ASN][1000 genomes]
rs17389165	1.00[ASN][1000 genomes]
rs1816062	0.85[ASN][1000 genomes]
rs1838206	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1922678	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1922679	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34316732	0.95[ASN][1000 genomes]
rs34558181	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34682492	0.95[ASN][1000 genomes]
rs34951736	1.00[ASN][1000 genomes]
rs35886114	0.95[ASN][1000 genomes]
rs35933960	0.85[ASN][1000 genomes]
rs4438866	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56180725	0.87[ASN][1000 genomes]
rs58268366	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6594698	0.88[EUR][1000 genomes]
rs6594706	0.95[ASN][1000 genomes]
rs6594713	0.95[ASN][1000 genomes]
rs6594714	0.95[ASN][1000 genomes]
rs6594715	0.95[ASN][1000 genomes]
rs6594716	0.95[ASN][1000 genomes]
rs66572866	1.00[ASN][1000 genomes]
rs67320720	1.00[ASN][1000 genomes]
rs67693032	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6870401	0.95[ASN][1000 genomes]
rs6871934	1.00[ASN][1000 genomes]
rs6872490	0.95[ASN][1000 genomes]
rs6874175	0.90[ASN][1000 genomes]
rs6880562	0.90[ASN][1000 genomes]
rs6883102	0.97[ASN][1000 genomes]
rs6887482	0.95[ASN][1000 genomes]
rs6887914	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6889489	0.95[ASN][1000 genomes]
rs6890874	1.00[ASN][1000 genomes]
rs6896843	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71577442	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71577447	1.00[ASN][1000 genomes]
rs71577448	1.00[ASN][1000 genomes]
rs72792189	0.90[ASN][1000 genomes]
rs7701895	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7706721	0.83[ASN][1000 genomes]
rs7709646	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7714221	0.95[ASN][1000 genomes]
rs7714760	0.95[ASN][1000 genomes]
rs7717630	0.95[ASN][1000 genomes]
rs7718616	1.00[ASN][1000 genomes]
rs7720414	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7725712	0.95[ASN][1000 genomes]
rs7727056	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7727501	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7729269	0.95[ASN][1000 genomes]
rs7731231	0.95[ASN][1000 genomes]
rs7734576	0.95[ASN][1000 genomes]
rs7737512	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8180416	0.81[ASN][1000 genomes]
rs9326890	0.81[ASN][1000 genomes]
rs9716322	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv882718	chr5:112519471-112674376	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv882719	chr5:112568212-112706511	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1024747	chr5:112592710-112679373	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv949165	chr5:112615626-112730216	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3469723	chr5:112666705-112672427	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3469721	chr5:112666751-112672404	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3469720	chr5:112666776-112672352	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3469722	chr5:112666822-112672321	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3469724	chr5:112666836-112672320	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv19580	chr5:112666841-112672251	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3354945	chr5:112669203-112670551	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112653000-112673600	Weak transcription	Fetal Kidney	kidney
2	chr5:112666400-112670600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr5:112666400-112670600	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr5:112666800-112670800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr5:112666800-112678600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr5:112667000-112672400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:112667000-112672800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr5:112667000-112674000	Weak transcription	Right Atrium	heart
9	chr5:112667000-112681000	Weak transcription	Esophagus	oesophagus
10	chr5:112667200-112670600	Weak transcription	Dnd41	blood
11	chr5:112667200-112671400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:112667200-112672000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:112667200-112672400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr5:112667200-112672400	Weak transcription	NH-A	brain
15	chr5:112667200-112672800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr5:112667200-112672800	Weak transcription	Fetal Stomach	stomach
17	chr5:112667200-112678800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr5:112667200-112678800	Weak transcription	HMEC	breast
19	chr5:112667200-112680400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr5:112667200-112680600	Weak transcription	NHEK	skin
21	chr5:112667200-112680800	Weak transcription	Right Ventricle	heart
22	chr5:112667200-112681000	Weak transcription	Pancreas	Pancrea
23	chr5:112667200-112693400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr5:112667600-112672000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr5:112667600-112672000	Weak transcription	Muscle Satellite Cultured Cells	--

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