The 2.0 version of rSNPBase

Variant report

Variant rs1816062
Chromosome Location chr5:112856023-112856024
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:119 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:112850400-112856200 Weak transcription Ovary ovary
2 chr5:112850400-112856200 Weak transcription Thymus Thymus
3 chr5:112850400-112857800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr5:112850400-112858200 Weak transcription Rectal Smooth Muscle rectum
5 chr5:112850400-112863600 Weak transcription ES-WA7 Cell Line embryonic stem cell
6 chr5:112850400-112866600 Weak transcription Esophagus oesophagus
7 chr5:112850400-112866600 Weak transcription Placenta Placenta
8 chr5:112850400-112866800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
9 chr5:112850400-112866800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
10 chr5:112850400-112866800 Weak transcription H9 Cell Line embryonic stem cell
11 chr5:112850400-112866800 Weak transcription Aorta Aorta
12 chr5:112850400-112866800 Weak transcription Lung lung
13 chr5:112850400-112867000 Weak transcription Pancreas Pancrea
14 chr5:112850400-112879000 Weak transcription Placenta Amnion Placenta Amnion
15 chr5:112850400-112879200 Weak transcription Gastric stomach
16 chr5:112850400-112904000 Weak transcription Psoas Muscle Psoas
17 chr5:112850600-112857600 Weak transcription HUES6 Cell Line embryonic stem cell
18 chr5:112850600-112860600 Weak transcription Primary neutrophils fromperipheralblood blood
19 chr5:112850600-112862000 Weak transcription ES-I3 Cell Line embryonic stem cell
20 chr5:112850600-112865400 Weak transcription H1 Cell Line embryonic stem cell
21 chr5:112850600-112865600 Weak transcription Fetal Kidney kidney
22 chr5:112850600-112866600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
23 chr5:112850600-112866600 Weak transcription Duodenum Mucosa Duodenum
24 chr5:112850600-112867600 Weak transcription Rectal Mucosa Donor 31 rectum
25 chr5:112850600-112868600 Weak transcription Skeletal Muscle Female skeletal muscle
26 chr5:112850600-112874800 Weak transcription Stomach Smooth Muscle stomach
27 chr5:112850600-112879200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
28 chr5:112850600-112908400 Weak transcription Colonic Mucosa Colon
29 chr5:112850800-112856200 Weak transcription NHDF-Ad bronchial
30 chr5:112850800-112856400 Weak transcription Brain Germinal Matrix brain
31 chr5:112851200-112856200 Weak transcription HMEC breast
32 chr5:112851200-112856800 Strong transcription Fetal Muscle Leg muscle
33 chr5:112851200-112857000 Strong transcription Fetal Muscle Trunk muscle
34 chr5:112851200-112858200 Weak transcription Primary T killer memory cells from peripheral blood blood
35 chr5:112851400-112856600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
36 chr5:112851400-112856600 Strong transcription K562 blood
37 chr5:112851400-112857000 Strong transcription Primary monocytes fromperipheralblood blood
38 chr5:112851400-112857000 Strong transcription Primary T cells fromperipheralblood blood
39 chr5:112851400-112857000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr5:112851400-112858200 Weak transcription Brain Anterior Caudate brain
41 chr5:112851400-112858200 Weak transcription Brain Substantia Nigra brain
42 chr5:112851400-112859800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr5:112851400-112864400 Weak transcription Hela-S3 cervix
44 chr5:112851400-112866800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
45 chr5:112851400-112879000 Weak transcription Brain Cingulate Gyrus brain
46 chr5:112851600-112856600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
47 chr5:112851600-112866600 Weak transcription Small Intestine intestine
48 chr5:112851600-112866800 Weak transcription NHLF lung
49 chr5:112851600-112893200 Weak transcription Fetal Brain Male brain
50 chr5:112851600-112902800 Weak transcription Skeletal Muscle Male skeletal muscle

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Last update: Aug 31, 2015