Variant report

Variant	rs9326891
Chromosome Location	chr5:112873928-112873929
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112873639..112875869-chr5:112878944..112880732,3	K562	blood:
2	chr5:112849106..112850875-chr5:112872838..112875001,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000047188	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10051115	0.86[CEU][hapmap]
rs10053341	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs10056194	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10065790	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10071684	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10072503	0.83[EUR][1000 genomes]
rs10077431	0.94[CEU][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10078214	0.89[CEU][hapmap]
rs11241213	0.87[EUR][1000 genomes]
rs12523145	0.93[YRI][hapmap]
rs13169748	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13171630	0.86[EUR][1000 genomes]
rs13174075	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs13181534	0.80[CEU][hapmap]
rs13182972	0.84[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13362189	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13436825	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17331844	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17389165	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs1816062	0.91[EUR][1000 genomes]
rs2162841	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2914198	0.81[EUR][1000 genomes]
rs2972689	0.82[EUR][1000 genomes]
rs2972690	0.82[EUR][1000 genomes]
rs33992630	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34147627	0.82[EUR][1000 genomes]
rs35193208	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35926701	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35933960	0.86[EUR][1000 genomes]
rs36023163	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6594713	0.80[CEU][hapmap]
rs6594714	0.82[CEU][hapmap]
rs66540465	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6867579	0.83[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6870401	0.82[CEU][hapmap]
rs6871934	0.84[CEU][hapmap]
rs6872490	0.80[EUR][1000 genomes]
rs6879257	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6883547	0.80[CEU][hapmap]
rs6887482	0.80[CEU][hapmap]
rs6890874	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs72792189	0.87[EUR][1000 genomes]
rs7706721	0.84[CEU][hapmap];0.87[EUR][1000 genomes]
rs7718203	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7729269	0.80[CEU][hapmap]
rs7731231	0.86[CEU][hapmap]
rs8180416	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9326890	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882720	chr5:112859994-112911165	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv882721	chr5:112859994-112963488	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv882722	chr5:112868878-112899573	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv882723	chr5:112868878-112911165	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv882724	chr5:112868878-112933202	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112850400-112879000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr5:112850400-112879200	Weak transcription	Gastric	stomach
3	chr5:112850400-112904000	Weak transcription	Psoas Muscle	Psoas
4	chr5:112850600-112874800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr5:112850600-112879200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr5:112850600-112908400	Weak transcription	Colonic Mucosa	Colon
7	chr5:112851400-112879000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr5:112851600-112893200	Weak transcription	Fetal Brain Male	brain
9	chr5:112851600-112902800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr5:112852400-112878800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr5:112852400-112882200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr5:112852400-112882200	Weak transcription	Fetal Heart	heart
13	chr5:112853200-112882400	Weak transcription	Brain Angular Gyrus	brain
14	chr5:112857000-112877600	Weak transcription	HepG2	liver
15	chr5:112858800-112876000	Weak transcription	Brain Anterior Caudate	brain
16	chr5:112858800-112882000	Weak transcription	Brain Substantia Nigra	brain
17	chr5:112858800-112882200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr5:112860400-112879000	Weak transcription	Brain Hippocampus Middle	brain
19	chr5:112860400-112882200	Weak transcription	Colon Smooth Muscle	Colon
20	chr5:112862800-112891200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr5:112864200-112882200	Weak transcription	Stomach Mucosa	stomach
22	chr5:112866000-112878000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr5:112867000-112882000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr5:112867000-112888200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr5:112867000-112910000	Weak transcription	Right Ventricle	heart
26	chr5:112867200-112878800	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr5:112867200-112880600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr5:112867200-112882400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr5:112867200-112903400	Weak transcription	Pancreas	Pancrea
30	chr5:112867200-112904000	Weak transcription	Lung	lung
31	chr5:112867200-112904200	Weak transcription	Aorta	Aorta
32	chr5:112867200-112909800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr5:112867200-112909800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr5:112867200-112910000	Weak transcription	Esophagus	oesophagus
35	chr5:112867400-112875000	Weak transcription	Brain Germinal Matrix	brain
36	chr5:112867400-112878800	Weak transcription	Thymus	Thymus
37	chr5:112867400-112879000	Weak transcription	NHLF	lung
38	chr5:112867400-112879200	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr5:112867400-112879200	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr5:112867400-112882200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr5:112867400-112888000	Weak transcription	HSMMtube	muscle
42	chr5:112867400-112888800	Weak transcription	Ovary	ovary
43	chr5:112867400-112926000	Weak transcription	Small Intestine	intestine
44	chr5:112867400-112933000	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr5:112867600-112882600	Weak transcription	Fetal Brain Female	brain
46	chr5:112867600-112891200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr5:112867800-112877200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr5:112868000-112874000	Weak transcription	Primary T cells from cord blood	blood
49	chr5:112868000-112878400	Weak transcription	NHEK	skin
50	chr5:112868000-112879600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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