Variant report

Variant	rs6872490
Chromosome Location	chr5:112784592-112784593
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112784529..112786185-chr5:112829996..112832714,2	K562	blood:

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs10038521	0.90[ASN][1000 genomes]
rs10051115	0.90[ASN][1000 genomes]
rs10053341	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10056194	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10061462	0.90[ASN][1000 genomes]
rs10065790	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10071684	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10072503	0.81[ASN][1000 genomes]
rs10078214	0.86[ASN][1000 genomes]
rs10434754	0.86[ASN][1000 genomes]
rs10477490	0.90[ASN][1000 genomes]
rs11241213	0.81[EUR][1000 genomes]
rs13154300	0.95[ASN][1000 genomes]
rs13159509	0.95[ASN][1000 genomes]
rs13164326	0.86[ASN][1000 genomes]
rs13169748	0.84[EUR][1000 genomes]
rs13170435	0.86[ASN][1000 genomes]
rs13171482	0.90[ASN][1000 genomes]
rs13171630	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13174075	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13174151	0.81[ASN][1000 genomes]
rs13174206	0.95[ASN][1000 genomes]
rs13177853	0.86[ASN][1000 genomes]
rs13180516	0.95[ASN][1000 genomes]
rs13180522	0.90[ASN][1000 genomes]
rs13181534	0.90[ASN][1000 genomes]
rs13181732	0.95[ASN][1000 genomes]
rs13181944	0.95[ASN][1000 genomes]
rs13182972	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13183383	0.90[ASN][1000 genomes]
rs13184538	0.86[ASN][1000 genomes]
rs13187823	0.95[ASN][1000 genomes]
rs13189050	0.90[ASN][1000 genomes]
rs13189910	0.90[ASN][1000 genomes]
rs13362189	0.81[ASN][1000 genomes]
rs13436825	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1602862	0.86[ASN][1000 genomes]
rs17325307	0.83[ASN][1000 genomes]
rs17325503	0.81[ASN][1000 genomes]
rs17325825	0.86[ASN][1000 genomes]
rs17327964	0.95[ASN][1000 genomes]
rs17331844	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17388260	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17389165	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1816062	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1838206	0.86[ASN][1000 genomes]
rs2162841	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2914198	0.81[ASN][1000 genomes]
rs2972689	0.81[ASN][1000 genomes]
rs2972690	0.81[ASN][1000 genomes]
rs33992630	0.86[ASN][1000 genomes]
rs34147627	0.81[ASN][1000 genomes]
rs34316732	0.90[ASN][1000 genomes]
rs34324763	0.81[ASN][1000 genomes]
rs34558181	0.86[ASN][1000 genomes]
rs34682492	0.90[ASN][1000 genomes]
rs34951736	0.95[ASN][1000 genomes]
rs35359071	0.95[ASN][1000 genomes]
rs35886114	0.90[ASN][1000 genomes]
rs35926701	0.81[ASN][1000 genomes]
rs35933960	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36023163	0.81[ASN][1000 genomes]
rs4438866	0.95[ASN][1000 genomes]
rs56180725	0.91[ASN][1000 genomes]
rs58268366	0.86[ASN][1000 genomes]
rs6594706	0.90[ASN][1000 genomes]
rs6594713	0.90[ASN][1000 genomes]
rs6594714	0.90[ASN][1000 genomes]
rs6594715	0.90[ASN][1000 genomes]
rs6594716	0.90[ASN][1000 genomes]
rs66540465	0.86[EUR][1000 genomes]
rs66572866	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67320720	0.95[ASN][1000 genomes]
rs67693032	0.95[ASN][1000 genomes]
rs6867579	0.81[ASN][1000 genomes]
rs6870401	0.90[ASN][1000 genomes]
rs6871934	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6874175	0.86[ASN][1000 genomes]
rs6879257	0.84[EUR][1000 genomes]
rs6880562	0.86[ASN][1000 genomes]
rs6883102	0.93[ASN][1000 genomes]
rs6883547	0.86[ASN][1000 genomes]
rs6887482	0.90[ASN][1000 genomes]
rs6887914	0.95[ASN][1000 genomes]
rs6889489	1.00[ASN][1000 genomes]
rs6890874	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6896843	0.95[ASN][1000 genomes]
rs71577442	0.86[ASN][1000 genomes]
rs71577447	0.95[ASN][1000 genomes]
rs71577448	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72792189	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7701895	0.83[ASN][1000 genomes]
rs7706721	0.85[EUR][1000 genomes]
rs7708831	0.81[ASN][1000 genomes]
rs7709646	0.90[ASN][1000 genomes]
rs7714221	1.00[ASN][1000 genomes]
rs7714760	0.90[ASN][1000 genomes]
rs7717630	0.90[ASN][1000 genomes]
rs7718203	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7718616	0.95[ASN][1000 genomes]
rs7720414	0.81[ASN][1000 genomes]
rs7725712	0.90[ASN][1000 genomes]
rs7727056	0.81[ASN][1000 genomes]
rs7727501	0.86[ASN][1000 genomes]
rs7729269	0.90[ASN][1000 genomes]
rs7731231	0.90[ASN][1000 genomes]
rs7734576	0.90[ASN][1000 genomes]
rs7737512	0.81[ASN][1000 genomes]
rs8180416	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9326890	0.86[ASN][1000 genomes]
rs9326891	0.80[EUR][1000 genomes]
rs9716322	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112762000-112786000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:112764600-112786400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:112764800-112786800	Weak transcription	NHEK	skin
4	chr5:112770600-112786800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:112780400-112787400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:112782200-112789600	Enhancers	Fetal Stomach	stomach
7	chr5:112783600-112785000	Enhancers	Liver	Liver
8	chr5:112783800-112786000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:112784000-112787800	Weak transcription	Fetal Heart	heart
10	chr5:112784200-112785200	Weak transcription	Fetal Lung	lung

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