Variant report

Variant	rs36023163
Chromosome Location	chr5:112891009-112891010
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10051115	0.81[ASN][1000 genomes]
rs10053341	0.81[ASN][1000 genomes]
rs10056194	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10061462	0.81[ASN][1000 genomes]
rs10065790	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10071684	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10072503	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10077431	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10078214	0.95[ASN][1000 genomes]
rs11241213	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13154300	0.85[ASN][1000 genomes]
rs13169748	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13171482	0.81[ASN][1000 genomes]
rs13171630	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13174075	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13174206	0.85[ASN][1000 genomes]
rs13180516	0.85[ASN][1000 genomes]
rs13180522	0.81[ASN][1000 genomes]
rs13181534	0.81[ASN][1000 genomes]
rs13181732	0.85[ASN][1000 genomes]
rs13182972	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13187823	0.85[ASN][1000 genomes]
rs13189050	0.81[ASN][1000 genomes]
rs13189910	0.81[ASN][1000 genomes]
rs13362189	0.86[ASN][1000 genomes]
rs13436825	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17327964	0.85[ASN][1000 genomes]
rs17331844	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17388260	0.85[ASN][1000 genomes]
rs17389165	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1816062	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2162841	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2914198	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2972689	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2972690	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs33992630	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34147627	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34316732	0.81[ASN][1000 genomes]
rs34324763	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34682492	0.81[ASN][1000 genomes]
rs34951736	0.85[ASN][1000 genomes]
rs35093510	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35193208	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35886114	0.81[ASN][1000 genomes]
rs35926701	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35933960	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6594713	0.81[ASN][1000 genomes]
rs6594714	0.81[ASN][1000 genomes]
rs6594715	0.81[ASN][1000 genomes]
rs6594716	0.81[ASN][1000 genomes]
rs66540465	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs66572866	0.85[ASN][1000 genomes]
rs67320720	0.85[ASN][1000 genomes]
rs67693032	0.85[ASN][1000 genomes]
rs6867579	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6870401	0.81[ASN][1000 genomes]
rs6871934	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6872490	0.81[ASN][1000 genomes]
rs6879257	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6883102	0.83[ASN][1000 genomes]
rs6883547	0.95[ASN][1000 genomes]
rs6887482	0.81[ASN][1000 genomes]
rs6887914	0.85[ASN][1000 genomes]
rs6889489	0.81[ASN][1000 genomes]
rs6890874	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71577447	0.85[ASN][1000 genomes]
rs71577448	0.85[ASN][1000 genomes]
rs72792189	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7706721	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7708831	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7714221	0.81[ASN][1000 genomes]
rs7714760	0.81[ASN][1000 genomes]
rs7717630	0.81[ASN][1000 genomes]
rs7718203	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7718616	0.85[ASN][1000 genomes]
rs7725712	0.81[ASN][1000 genomes]
rs7729269	0.81[ASN][1000 genomes]
rs7731231	0.81[ASN][1000 genomes]
rs7734576	0.81[ASN][1000 genomes]
rs8180416	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9326890	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9326891	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882720	chr5:112859994-112911165	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv882721	chr5:112859994-112963488	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv882722	chr5:112868878-112899573	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv882723	chr5:112868878-112911165	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv882724	chr5:112868878-112933202	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
6	esv3430774	chr5:112888153-112892251	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112850400-112904000	Weak transcription	Psoas Muscle	Psoas
2	chr5:112850600-112908400	Weak transcription	Colonic Mucosa	Colon
3	chr5:112851600-112893200	Weak transcription	Fetal Brain Male	brain
4	chr5:112851600-112902800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr5:112862800-112891200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr5:112867000-112910000	Weak transcription	Right Ventricle	heart
7	chr5:112867200-112903400	Weak transcription	Pancreas	Pancrea
8	chr5:112867200-112904000	Weak transcription	Lung	lung
9	chr5:112867200-112904200	Weak transcription	Aorta	Aorta
10	chr5:112867200-112909800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr5:112867200-112909800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr5:112867200-112910000	Weak transcription	Esophagus	oesophagus
13	chr5:112867400-112926000	Weak transcription	Small Intestine	intestine
14	chr5:112867400-112933000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr5:112867600-112891200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr5:112868000-112893400	Strong transcription	Dnd41	blood
17	chr5:112868400-112893600	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr5:112868600-112911400	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr5:112869200-112910000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr5:112870200-112930800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr5:112872000-112904000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr5:112872000-112915000	Weak transcription	Hela-S3	cervix
23	chr5:112873000-112894000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr5:112873000-112900600	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr5:112873400-112908800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr5:112874000-112909600	Weak transcription	Spleen	Spleen
27	chr5:112874400-112902600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr5:112876000-112918800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr5:112877200-112905800	Weak transcription	Fetal Stomach	stomach
30	chr5:112877400-112892000	Weak transcription	Brain Germinal Matrix	brain
31	chr5:112878200-112894000	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr5:112879600-112895200	Weak transcription	Left Ventricle	heart
33	chr5:112879600-112902800	Weak transcription	Thymus	Thymus
34	chr5:112879600-112904200	Weak transcription	Gastric	stomach
35	chr5:112881800-112906400	Weak transcription	Fetal Intestine Small	intestine
36	chr5:112882000-112893400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr5:112882600-112904000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr5:112882800-112909600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr5:112883000-112899600	Weak transcription	Brain Angular Gyrus	brain
40	chr5:112883000-112903200	Weak transcription	Rectal Smooth Muscle	rectum
41	chr5:112883200-112895200	Weak transcription	NHEK	skin
42	chr5:112883200-112896400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr5:112883400-112895400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr5:112883800-112893200	Strong transcription	Adipose Nuclei	Adipose
45	chr5:112883800-112907400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr5:112884200-112905200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr5:112884200-112905600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr5:112884200-112908000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr5:112884800-112891800	Strong transcription	Osteobl	bone
50	chr5:112884800-112893400	Strong transcription	Rectal Mucosa Donor 31	rectum

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