Variant report

Variant	rs17388260
Chromosome Location	chr5:112764578-112764579
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr5:112764495-112764590	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000232633	TF binding region

Extended variants
information (count: 134 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:133)

rs_ID	r²[population]
rs10038521	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10051115	0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10053341	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10061462	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10065790	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs10071684	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs10072503	0.81[ASN][1000 genomes]
rs10077431	1.00[CHB][hapmap]
rs10078214	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs10434754	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10477490	0.95[ASN][1000 genomes]
rs11241213	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1157696	0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs13154300	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13159509	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13164135	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs13164326	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs13169748	0.84[EUR][1000 genomes]
rs13170435	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs13171482	0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs13171630	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13174075	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13174151	0.86[ASN][1000 genomes]
rs13174206	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13177853	0.90[ASN][1000 genomes]
rs13180516	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13180522	0.95[ASN][1000 genomes]
rs13181534	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13181732	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13181944	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13182972	0.94[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13183383	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs13184538	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs13187823	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13189050	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs13189910	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13362189	0.81[ASN][1000 genomes]
rs13436825	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1602862	0.91[ASN][1000 genomes]
rs17325307	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17325503	0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17325825	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17327964	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17331844	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs17389165	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1816062	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1838206	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1922678	1.00[JPT][hapmap]
rs1922679	1.00[JPT][hapmap]
rs2162841	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2248930	0.86[CHB][hapmap]
rs2972689	0.85[ASN][1000 genomes]
rs2972690	0.85[ASN][1000 genomes]
rs33992630	0.81[ASN][1000 genomes]
rs34147627	0.85[ASN][1000 genomes]
rs34316732	0.95[ASN][1000 genomes]
rs34324763	0.85[ASN][1000 genomes]
rs34558181	0.90[ASN][1000 genomes]
rs34682492	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs348928	0.86[CHB][hapmap]
rs348929	0.86[CHB][hapmap]
rs348930	0.86[CHB][hapmap]
rs348931	0.86[CHB][hapmap]
rs348932	0.86[CHB][hapmap]
rs348947	0.86[CHB][hapmap]
rs348956	0.86[CHB][hapmap]
rs348961	0.86[CHB][hapmap]
rs348962	0.86[CHB][hapmap]
rs348963	0.86[CHB][hapmap]
rs34951736	1.00[ASN][1000 genomes]
rs35093510	0.81[ASN][1000 genomes]
rs35359071	1.00[ASN][1000 genomes]
rs35886114	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35926701	0.85[ASN][1000 genomes]
rs35933960	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36023163	0.85[ASN][1000 genomes]
rs367943	0.86[CHB][hapmap]
rs4438866	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs444322	0.86[CHB][hapmap]
rs455435	0.86[CHB][hapmap]
rs460079	0.86[CHB][hapmap]
rs463167	0.86[CHB][hapmap]
rs463249	0.86[CHB][hapmap]
rs56180725	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58268366	0.90[ASN][1000 genomes]
rs644154	0.86[CHB][hapmap]
rs6594706	0.95[ASN][1000 genomes]
rs6594713	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6594714	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6594715	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6594716	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66540465	0.86[EUR][1000 genomes]
rs66572866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67320720	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67693032	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6867579	0.94[CEU][hapmap];1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs6870401	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6871934	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6872490	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6874175	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6879257	0.84[EUR][1000 genomes]
rs6880562	0.90[ASN][1000 genomes]
rs6883102	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6883547	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs6887482	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6887914	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6889489	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6890874	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6896843	1.00[ASN][1000 genomes]
rs71577442	0.90[ASN][1000 genomes]
rs71577447	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71577448	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72792189	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7701895	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7706721	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7708831	0.85[ASN][1000 genomes]
rs7709646	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7714221	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7714760	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7717630	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7718203	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs7718616	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs7720414	0.86[ASN][1000 genomes]
rs7725712	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7727056	0.86[ASN][1000 genomes]
rs7727501	0.85[CHB][hapmap];0.90[ASN][1000 genomes]
rs7729269	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7731231	0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7734576	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7737512	0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs8180416	0.83[CEU][hapmap];1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs9326890	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs9716322	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112761400-112764800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr5:112762000-112786000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:112762600-112764800	Enhancers	NHEK	skin
4	chr5:112764200-112764600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:112764400-112765200	Enhancers	HMEC	breast
6	chr5:112764400-112769400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:112764400-112779200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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