Variant report

Variant	rs10056194
Chromosome Location	chr5:112857862-112857863
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112857449..112860235-chr5:112863616..112865733,2	K562	blood:
2	chr5:112855510..112858323-chr5:112860462..112863190,3	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10053341	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10065790	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10071684	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10072503	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10077431	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10078214	0.98[ASN][1000 genomes]
rs11241213	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13169748	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13171630	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13174075	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13182972	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13362189	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13436825	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17331844	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17389165	0.84[EUR][1000 genomes]
rs1816062	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2162841	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2914198	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2972689	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2972690	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs33992630	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34147627	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34324763	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35093510	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35193208	0.89[EUR][1000 genomes]
rs35926701	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35933960	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36023163	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66540465	0.86[EUR][1000 genomes]
rs6867579	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6872490	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6879257	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6883547	0.98[ASN][1000 genomes]
rs6889489	0.84[ASN][1000 genomes]
rs6890874	0.81[EUR][1000 genomes]
rs72792189	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7706721	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7708831	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7714221	0.84[ASN][1000 genomes]
rs7718203	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8180416	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9326890	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9326891	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112850400-112858200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr5:112850400-112863600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:112850400-112866600	Weak transcription	Esophagus	oesophagus
4	chr5:112850400-112866600	Weak transcription	Placenta	Placenta
5	chr5:112850400-112866800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:112850400-112866800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:112850400-112866800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr5:112850400-112866800	Weak transcription	Aorta	Aorta
9	chr5:112850400-112866800	Weak transcription	Lung	lung
10	chr5:112850400-112867000	Weak transcription	Pancreas	Pancrea
11	chr5:112850400-112879000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr5:112850400-112879200	Weak transcription	Gastric	stomach
13	chr5:112850400-112904000	Weak transcription	Psoas Muscle	Psoas
14	chr5:112850600-112860600	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr5:112850600-112862000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr5:112850600-112865400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr5:112850600-112865600	Weak transcription	Fetal Kidney	kidney
18	chr5:112850600-112866600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr5:112850600-112866600	Weak transcription	Duodenum Mucosa	Duodenum
20	chr5:112850600-112867600	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr5:112850600-112868600	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr5:112850600-112874800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr5:112850600-112879200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr5:112850600-112908400	Weak transcription	Colonic Mucosa	Colon
25	chr5:112851200-112858200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr5:112851400-112858200	Weak transcription	Brain Anterior Caudate	brain
27	chr5:112851400-112858200	Weak transcription	Brain Substantia Nigra	brain
28	chr5:112851400-112859800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr5:112851400-112864400	Weak transcription	Hela-S3	cervix
30	chr5:112851400-112866800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr5:112851400-112879000	Weak transcription	Brain Cingulate Gyrus	brain
32	chr5:112851600-112866600	Weak transcription	Small Intestine	intestine
33	chr5:112851600-112866800	Weak transcription	NHLF	lung
34	chr5:112851600-112893200	Weak transcription	Fetal Brain Male	brain
35	chr5:112851600-112902800	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr5:112851800-112858000	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr5:112851800-112859800	Weak transcription	Colon Smooth Muscle	Colon
38	chr5:112851800-112866800	Weak transcription	NH-A	brain
39	chr5:112852200-112866600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr5:112852400-112860800	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr5:112852400-112866000	Weak transcription	Adipose Nuclei	Adipose
42	chr5:112852400-112866600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr5:112852400-112878800	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr5:112852400-112882200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr5:112852400-112882200	Weak transcription	Fetal Heart	heart
46	chr5:112853200-112858000	Weak transcription	Brain Hippocampus Middle	brain
47	chr5:112853200-112859800	Weak transcription	Primary hematopoietic stem cells	blood
48	chr5:112853200-112882400	Weak transcription	Brain Angular Gyrus	brain
49	chr5:112853400-112860600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr5:112853400-112862000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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