Variant report

Variant	rs6602391
Chromosome Location	chr10:6078032-6078033
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:6077154..6078797-chr10:6082594..6084607,2	K562	blood:
2	chr10:6076656..6079069-chr10:6086121..6089076,2	MCF-7	breast:
3	chr10:6070515..6072335-chr10:6076874..6078701,2	K562	blood:
4	chr10:6076770..6078831-chr10:6080611..6082982,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RBM17-2	chr10:6077903-6078048	ENSG00000229664.1

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6602392	0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv525927	chr10:6059898-6078079	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv894814	chr10:6078032-6100725	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6066600-6079600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:6075000-6078600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:6075400-6079200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr10:6075800-6078800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
5	chr10:6075800-6079000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr10:6076000-6079000	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr10:6076000-6079600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:6076600-6079200	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr10:6076800-6081000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:6077000-6080600	Enhancers	Primary T cells fromperipheralblood	blood
11	chr10:6077000-6080600	Enhancers	Fetal Thymus	thymus
12	chr10:6077000-6083400	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr10:6077600-6079800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr10:6077800-6078200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:6077800-6078400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr10:6077800-6079400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr10:6077800-6080200	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr10:6078000-6078200	Enhancers	Right Ventricle	heart
19	chr10:6078000-6079600	Enhancers	Primary T cells from cord blood	blood
20	chr10:6078000-6081200	Enhancers	Primary T helper naive cells from peripheral blood	blood

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