Variant report

Variant	rs6602393
Chromosome Location	chr10:6078404-6078405
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12243549	1.00[AMR][1000 genomes]
rs12243643	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12258919	1.00[AMR][1000 genomes]
rs12722621	1.00[AMR][1000 genomes]
rs12722622	1.00[AMR][1000 genomes]
rs12722653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12722692	1.00[AMR][1000 genomes]
rs12722697	1.00[AMR][1000 genomes]
rs12722701	1.00[AMR][1000 genomes]
rs12722711	1.00[AMR][1000 genomes]
rs6602394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7896551	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7917588	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv894814	chr10:6078032-6100725	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6066600-6079600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:6075000-6078600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:6075400-6079200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr10:6075800-6078800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
5	chr10:6075800-6079000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr10:6076000-6079000	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr10:6076000-6079600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:6076600-6079200	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr10:6076800-6081000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:6077000-6080600	Enhancers	Primary T cells fromperipheralblood	blood
11	chr10:6077000-6080600	Enhancers	Fetal Thymus	thymus
12	chr10:6077000-6083400	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr10:6077600-6079800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr10:6077800-6079400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr10:6077800-6080200	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr10:6078000-6079600	Enhancers	Primary T cells from cord blood	blood
17	chr10:6078000-6081200	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr10:6078200-6080600	Enhancers	Primary B cells from peripheral blood	blood
19	chr10:6078200-6082200	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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