Variant report

Variant	rs12258919
Chromosome Location	chr10:6110520-6110521
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12243549	1.00[AMR][1000 genomes]
rs12243643	1.00[AMR][1000 genomes]
rs12250164	1.00[EUR][1000 genomes]
rs12251237	1.00[EUR][1000 genomes]
rs12258027	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12266724	1.00[EUR][1000 genomes]
rs12722612	0.86[AFR][1000 genomes]
rs12722614	0.86[AFR][1000 genomes]
rs12722621	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12722622	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12722653	1.00[AMR][1000 genomes]
rs12722692	1.00[AMR][1000 genomes]
rs12722697	1.00[AMR][1000 genomes]
rs12722701	1.00[AMR][1000 genomes]
rs12722711	1.00[AMR][1000 genomes]
rs62626317	0.87[AFR][1000 genomes]
rs6602393	1.00[AMR][1000 genomes]
rs6602394	1.00[AMR][1000 genomes]
rs7896551	1.00[AMR][1000 genomes]
rs7917588	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv894815	chr10:6108439-6161781	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6104200-6112600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:6104600-6111800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:6104600-6113600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr10:6106800-6114800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:6107000-6110800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr10:6107200-6110600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:6107200-6112000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr10:6107200-6114800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr10:6107200-6115000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr10:6107400-6112000	Enhancers	Adipose Nuclei	Adipose
11	chr10:6107400-6114800	Enhancers	Primary hematopoietic stem cells	blood
12	chr10:6107600-6111800	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr10:6108000-6110600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr10:6108000-6115600	Enhancers	Primary B cells from peripheral blood	blood
15	chr10:6108600-6111000	Weak transcription	Small Intestine	intestine
16	chr10:6108600-6112800	Weak transcription	Left Ventricle	heart
17	chr10:6108800-6110600	Weak transcription	Spleen	Spleen
18	chr10:6108800-6113400	Weak transcription	Right Atrium	heart
19	chr10:6108800-6113600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr10:6108800-6114200	Weak transcription	Right Ventricle	heart
21	chr10:6109000-6112600	Weak transcription	Placenta	Placenta
22	chr10:6109200-6110800	Enhancers	Primary B cells from cord blood	blood
23	chr10:6109400-6111200	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr10:6109400-6115400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr10:6109400-6117400	Enhancers	Fetal Thymus	thymus
26	chr10:6109600-6111600	Weak transcription	Lung	lung
27	chr10:6109600-6113000	Weak transcription	Duodenum Mucosa	Duodenum
28	chr10:6109800-6111800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
29	chr10:6110000-6110800	Enhancers	Fetal Muscle Leg	muscle
30	chr10:6110000-6110800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
31	chr10:6110000-6111200	Enhancers	Brain Hippocampus Middle	brain
32	chr10:6110000-6111600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
33	chr10:6110000-6111800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
34	chr10:6110200-6110600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr10:6110200-6111200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
36	chr10:6110200-6112000	Enhancers	GM12878-XiMat	blood
37	chr10:6110400-6110600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
38	chr10:6110400-6111000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
39	chr10:6110400-6111000	Enhancers	Fetal Lung	lung
40	chr10:6110400-6111400	Flanking Active TSS	Thymus	Thymus
41	chr10:6110400-6111600	Flanking Active TSS	Primary T cells from cord blood	blood
42	chr10:6110400-6111600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
43	chr10:6110400-6111600	Flanking Active TSS	Dnd41	blood
44	chr10:6110400-6111800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--

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