Variant report

Variant	rs12722612
Chromosome Location	chr10:6105953-6105954
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10905877	1.00[EUR][1000 genomes]
rs10905878	1.00[EUR][1000 genomes]
rs12242912	1.00[EUR][1000 genomes]
rs12251926	1.00[EUR][1000 genomes]
rs12257378	1.00[EUR][1000 genomes]
rs12258027	1.00[AMR][1000 genomes]
rs12258919	0.86[AFR][1000 genomes]
rs12266057	1.00[EUR][1000 genomes]
rs12722614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12722621	0.90[AFR][1000 genomes]
rs12722622	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12722623	1.00[EUR][1000 genomes]
rs12722634	1.00[EUR][1000 genomes]
rs583586	1.00[EUR][1000 genomes]
rs62626317	0.84[AFR][1000 genomes]
rs7092587	1.00[EUR][1000 genomes]
rs73605967	1.00[EUR][1000 genomes]
rs74113893	1.00[EUR][1000 genomes]
rs7896921	1.00[EUR][1000 genomes]
rs9988772	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6096200-6107400	Weak transcription	Placenta	Placenta
2	chr10:6102200-6107400	Weak transcription	Right Atrium	heart
3	chr10:6102200-6107400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr10:6104200-6107200	Weak transcription	Left Ventricle	heart
5	chr10:6104200-6112600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:6104400-6107400	Weak transcription	Adipose Nuclei	Adipose
7	chr10:6104400-6107600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr10:6104600-6107400	Weak transcription	Spleen	Spleen
9	chr10:6104600-6111800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr10:6104600-6113600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr10:6104800-6107200	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr10:6104800-6107400	Weak transcription	Lung	lung
13	chr10:6104800-6110200	Weak transcription	GM12878-XiMat	blood
14	chr10:6105000-6106000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr10:6105000-6107200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr10:6105000-6107200	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr10:6105000-6108000	Weak transcription	Primary B cells from peripheral blood	blood
18	chr10:6105000-6108200	Weak transcription	Primary B cells from cord blood	blood
19	chr10:6105000-6109200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr10:6105200-6106200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr10:6105200-6106200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr10:6105200-6106400	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr10:6105200-6107000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr10:6105200-6107200	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr10:6105200-6107200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr10:6105200-6107200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr10:6105200-6107200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr10:6105200-6107200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr10:6105200-6107400	Weak transcription	Primary hematopoietic stem cells	blood
30	chr10:6105200-6107600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr10:6105200-6108000	Weak transcription	Primary T cells from cord blood	blood
32	chr10:6105200-6108000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr10:6105400-6107200	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr10:6105600-6108000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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