Variant report

Variant	rs73605967
Chromosome Location	chr10:6136411-6136412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr10:6136361-6136426	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:6130789..6132928-chr10:6134999..6139816,5	MCF-7	breast:
2	chr10:6135493..6137735-chr10:6209780..6211467,2	K562	blood:
3	chr10:6131034..6133733-chr10:6136024..6138552,2	K562	blood:
4	chr10:6136068..6139064-chr10:6145964..6148767,2	MCF-7	breast:

Variant related genes	Relation type
RBM17	TF binding region
ENSG00000134453	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10905877	1.00[EUR][1000 genomes]
rs10905878	1.00[EUR][1000 genomes]
rs12241939	0.86[AFR][1000 genomes]
rs12242912	1.00[EUR][1000 genomes]
rs12251926	1.00[EUR][1000 genomes]
rs12257378	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12266057	1.00[EUR][1000 genomes]
rs12722612	1.00[EUR][1000 genomes]
rs12722614	1.00[EUR][1000 genomes]
rs12722622	1.00[EUR][1000 genomes]
rs12722623	1.00[EUR][1000 genomes]
rs12722634	1.00[EUR][1000 genomes]
rs583586	1.00[EUR][1000 genomes]
rs59315743	1.00[AMR][1000 genomes]
rs7092587	1.00[EUR][1000 genomes]
rs73605985	1.00[AMR][1000 genomes]
rs7896921	1.00[EUR][1000 genomes]
rs8177650	1.00[AMR][1000 genomes]
rs9988772	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv894815	chr10:6108439-6161781	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1040397	chr10:6129759-6158697	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6132200-6138200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:6132200-6139200	Weak transcription	Gastric	stomach
3	chr10:6132400-6139000	Weak transcription	Esophagus	oesophagus
4	chr10:6132400-6139200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr10:6132400-6139200	Weak transcription	Aorta	Aorta
6	chr10:6132400-6139600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:6132600-6137600	Weak transcription	HSMM	muscle
8	chr10:6132600-6138600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:6132600-6139000	Weak transcription	Colonic Mucosa	Colon
10	chr10:6132600-6139200	Weak transcription	Pancreas	Pancrea
11	chr10:6132800-6137600	Weak transcription	Osteobl	bone
12	chr10:6132800-6137800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:6132800-6137800	Weak transcription	NHDF-Ad	bronchial
14	chr10:6132800-6137800	Weak transcription	NHLF	lung
15	chr10:6132800-6138000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:6132800-6138800	Weak transcription	Placenta	Placenta
17	chr10:6132800-6139200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr10:6132800-6139400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr10:6132800-6139600	Weak transcription	NH-A	brain
20	chr10:6132800-6143200	Weak transcription	HSMMtube	muscle
21	chr10:6132800-6145600	Weak transcription	Fetal Kidney	kidney
22	chr10:6132800-6150400	Weak transcription	Stomach Mucosa	stomach
23	chr10:6132800-6152000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:6133200-6137400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr10:6133400-6137000	Weak transcription	Right Ventricle	heart
26	chr10:6133400-6137200	Weak transcription	Fetal Muscle Leg	muscle
27	chr10:6133400-6137400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr10:6133400-6137400	Weak transcription	Spleen	Spleen
29	chr10:6133400-6137600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr10:6133400-6137600	Weak transcription	Fetal Muscle Trunk	muscle
31	chr10:6133400-6137800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr10:6133400-6138000	Weak transcription	Stomach Smooth Muscle	stomach
33	chr10:6133400-6139000	Weak transcription	Fetal Intestine Large	intestine
34	chr10:6133400-6139200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr10:6133600-6137000	Weak transcription	Fetal Stomach	stomach
36	chr10:6133600-6138200	Enhancers	Adipose Nuclei	Adipose
37	chr10:6133800-6136800	Enhancers	Primary neutrophils fromperipheralblood	blood
38	chr10:6133800-6137400	Weak transcription	Right Atrium	heart
39	chr10:6133800-6137600	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr10:6133800-6137600	Weak transcription	Fetal Brain Male	brain
41	chr10:6133800-6139000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr10:6133800-6139000	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr10:6133800-6139000	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr10:6133800-6139400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr10:6133800-6139600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr10:6133800-6149000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr10:6134000-6136600	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr10:6134000-6136800	Weak transcription	Fetal Thymus	thymus
49	chr10:6134000-6137000	Weak transcription	Left Ventricle	heart
50	chr10:6134000-6137400	Weak transcription	Primary T cells fromperipheralblood	blood

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