Variant report

Variant	rs12258027
Chromosome Location	chr10:6124359-6124360
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12250164	1.00[EUR][1000 genomes]
rs12251237	1.00[EUR][1000 genomes]
rs12258919	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12266724	1.00[EUR][1000 genomes]
rs12722612	1.00[AMR][1000 genomes]
rs12722614	1.00[AMR][1000 genomes]
rs619797	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv894815	chr10:6108439-6161781	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6115000-6124600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr10:6115600-6127800	Weak transcription	Primary B cells from peripheral blood	blood
3	chr10:6121600-6125600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
4	chr10:6122600-6124600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr10:6123600-6124600	Weak transcription	Left Ventricle	heart
6	chr10:6123800-6126600	Enhancers	Fetal Thymus	thymus
7	chr10:6124000-6125600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr10:6124200-6125000	Enhancers	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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