Variant report

Variant	rs6603036
Chromosome Location	chr15:83596558-83596559
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55953293	0.80[AFR][1000 genomes]
rs58482034	0.82[AFR][1000 genomes]
rs6603037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7164936	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7166145	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7175005	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8028643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8042735	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83583200-83597200	Enhancers	Pancreas	Pancrea
2	chr15:83585600-83599200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr15:83585800-83600000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:83586600-83619400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr15:83588200-83596600	Weak transcription	Brain Hippocampus Middle	brain
6	chr15:83588800-83611600	Weak transcription	Right Atrium	heart
7	chr15:83589400-83602800	Weak transcription	Esophagus	oesophagus
8	chr15:83589600-83605400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr15:83591400-83599000	Weak transcription	HSMMtube	muscle
10	chr15:83592600-83596600	Weak transcription	HepG2	liver
11	chr15:83592600-83610600	Weak transcription	Liver	Liver
12	chr15:83593600-83604800	Weak transcription	Psoas Muscle	Psoas
13	chr15:83594200-83602800	Weak transcription	Gastric	stomach
14	chr15:83594800-83597400	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr15:83596400-83596600	Bivalent Enhancer	K562	blood
16	chr15:83596400-83598400	Enhancers	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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