Variant report

Variant	rs8028643
Chromosome Location	chr15:83601288-83601289
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2002408	1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap]
rs55953293	0.80[AFR][1000 genomes]
rs58482034	0.82[AFR][1000 genomes]
rs6603036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6603037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6603039	0.87[ASW][hapmap]
rs6603043	1.00[MEX][hapmap]
rs7164936	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];0.85[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7166145	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7175005	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7176998	1.00[ASW][hapmap];1.00[CHD][hapmap]
rs8031595	1.00[ASW][hapmap];1.00[MEX][hapmap]
rs8041403	1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap]
rs8042735	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83586600-83619400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr15:83588800-83611600	Weak transcription	Right Atrium	heart
3	chr15:83589400-83602800	Weak transcription	Esophagus	oesophagus
4	chr15:83589600-83605400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr15:83592600-83610600	Weak transcription	Liver	Liver
6	chr15:83593600-83604800	Weak transcription	Psoas Muscle	Psoas
7	chr15:83594200-83602800	Weak transcription	Gastric	stomach
8	chr15:83598600-83608600	Enhancers	Pancreas	Pancrea
9	chr15:83599600-83606200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr15:83599800-83602600	Weak transcription	HSMM	muscle
11	chr15:83600200-83601600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr15:83600200-83602600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr15:83600200-83602600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr15:83600200-83603000	Weak transcription	HSMMtube	muscle
15	chr15:83600200-83606000	Weak transcription	Right Ventricle	heart
16	chr15:83600800-83603400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr15:83601000-83602000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr15:83601000-83602600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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