Variant report

Variant	rs8031595
Chromosome Location	chr15:83619966-83619967
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83514448..83517408-chr15:83618486..83620458,2	MCF-7	breast:
2	chr15:83478082..83479855-chr15:83619241..83621149,3	MCF-7	breast:
3	chr15:83619377..83622023-chr15:83652376..83655486,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000103942	Chromatin interaction
ENSG00000169612	Chromatin interaction
ENSG00000156232	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1964495	0.86[AFR][1000 genomes]
rs2002408	1.00[ASW][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap]
rs2123161	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59512422	0.83[EUR][1000 genomes]
rs61738562	0.80[AMR][1000 genomes]
rs6603039	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6603043	1.00[MEX][hapmap]
rs7163121	0.91[YRI][hapmap];0.80[AFR][1000 genomes]
rs7164936	1.00[ASW][hapmap]
rs7175005	1.00[ASW][hapmap]
rs7176998	1.00[ASW][hapmap];0.89[LWK][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs74030863	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8027909	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8028643	1.00[ASW][hapmap];1.00[MEX][hapmap]
rs8028887	0.94[AFR][1000 genomes]
rs8028925	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs8041403	1.00[ASW][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap]
rs8041565	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83606600-83620000	Weak transcription	Right Ventricle	heart
2	chr15:83611800-83620400	Weak transcription	Right Atrium	heart
3	chr15:83618000-83620000	Weak transcription	Spleen	Spleen
4	chr15:83618800-83620000	Enhancers	Primary B cells from peripheral blood	blood
5	chr15:83618800-83620000	Enhancers	HepG2	liver
6	chr15:83618800-83622000	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr15:83619000-83620000	Weak transcription	Lung	lung
8	chr15:83619000-83620800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr15:83619000-83621600	Active TSS	Pancreas	Pancrea
10	chr15:83619200-83620200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr15:83619200-83620400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr15:83619200-83621200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr15:83619400-83620000	Enhancers	Primary B cells from cord blood	blood
14	chr15:83619400-83622000	Active TSS	Fetal Kidney	kidney
15	chr15:83619600-83620200	Enhancers	Colon Smooth Muscle	Colon
16	chr15:83619600-83620400	Active TSS	Brain Angular Gyrus	brain
17	chr15:83619600-83621000	Flanking Active TSS	Liver	Liver
18	chr15:83619800-83620000	Flanking Active TSS	HSMMtube	muscle
19	chr15:83619800-83620200	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr15:83619800-83620200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr15:83619800-83620200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr15:83619800-83620200	Enhancers	Brain Cingulate Gyrus	brain
23	chr15:83619800-83620200	Enhancers	Rectal Smooth Muscle	rectum
24	chr15:83619800-83620200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
25	chr15:83619800-83620200	Flanking Bivalent TSS/Enh	GM12878-XiMat	blood
26	chr15:83619800-83620200	Bivalent Enhancer	Osteobl	bone
27	chr15:83619800-83620400	Active TSS	Brain Anterior Caudate	brain
28	chr15:83619800-83620400	Flanking Active TSS	Brain Hippocampus Middle	brain
29	chr15:83619800-83620400	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
30	chr15:83619800-83620400	Enhancers	Esophagus	oesophagus
31	chr15:83619800-83620400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
32	chr15:83619800-83620600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr15:83619800-83620600	Bivalent Enhancer	Fetal Muscle Leg	muscle
34	chr15:83619800-83620600	Flanking Active TSS	Psoas Muscle	Psoas
35	chr15:83619800-83620800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
36	chr15:83619800-83620800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
37	chr15:83619800-83620800	Flanking Active TSS	Stomach Smooth Muscle	stomach
38	chr15:83619800-83621000	Bivalent Enhancer	Fetal Thymus	thymus
39	chr15:83619800-83621800	Active TSS	Gastric	stomach
40	chr15:83619800-83622200	Active TSS	Brain Inferior Temporal Lobe	brain

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