Variant report

Variant	rs660541
Chromosome Location	chr11:100934367-100934368
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100933625..100935266-chr11:100997720..101000555,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000082175	Chromatin interaction

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10895056	0.95[ASN][1000 genomes]
rs10895057	0.80[ASW][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10895058	0.89[CHB][hapmap];0.83[YRI][hapmap]
rs10895063	0.94[CHB][hapmap]
rs10895065	0.94[CHB][hapmap]
rs11224575	0.94[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap];0.94[ASN][1000 genomes]
rs11224580	0.80[ASW][hapmap];0.89[CHB][hapmap];0.88[CHD][hapmap];0.85[YRI][hapmap]
rs11224589	0.94[CHB][hapmap]
rs11224592	0.94[CHB][hapmap]
rs11224598	0.94[CHB][hapmap];0.88[CHD][hapmap]
rs1144133	0.94[CHB][hapmap];0.88[CHD][hapmap];0.80[ASN][1000 genomes]
rs1145460	0.94[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs11571171	0.94[CHB][hapmap]
rs1379131	0.94[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap];0.93[ASN][1000 genomes]
rs1456765	0.94[CHB][hapmap]
rs1824126	0.94[CHB][hapmap]
rs1824128	0.80[ASW][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.98[ASN][1000 genomes]
rs473409	0.93[ASN][1000 genomes]
rs478850	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs481855	0.94[CHB][hapmap];0.88[CHD][hapmap]
rs484389	1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs486992	0.94[CHB][hapmap];0.88[CHD][hapmap]
rs492827	1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs495189	0.88[CHB][hapmap];0.85[CHD][hapmap]
rs495308	0.95[ASN][1000 genomes]
rs498370	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs499699	0.95[ASN][1000 genomes]
rs500760	1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs501732	0.88[CHB][hapmap]
rs503602	0.94[CHB][hapmap];0.88[CHD][hapmap]
rs504372	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs504402	0.94[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs505229	0.94[ASN][1000 genomes]
rs508533	0.94[CHB][hapmap]
rs508653	0.94[CHB][hapmap];0.85[CHD][hapmap]
rs511298	1.00[CHB][hapmap];0.91[CHD][hapmap];0.82[ASN][1000 genomes]
rs511484	0.94[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs516693	0.94[CHB][hapmap]
rs516895	0.82[CHD][hapmap]
rs518382	1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs522053	1.00[CHB][hapmap];0.91[CHD][hapmap]
rs523323	0.94[CHB][hapmap]
rs523332	0.82[CHD][hapmap]
rs523630	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs526487	0.94[ASN][1000 genomes]
rs528566	0.95[ASN][1000 genomes]
rs529359	0.88[CHB][hapmap]
rs529775	0.85[CHB][hapmap]
rs535362	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs537681	0.88[CHB][hapmap]
rs538915	0.94[CHB][hapmap];0.85[CHD][hapmap]
rs540622	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs542384	0.94[CHB][hapmap]
rs542491	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs543215	0.94[CHB][hapmap];0.88[CHD][hapmap]
rs545835	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs545838	0.91[ASN][1000 genomes]
rs546763	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs547378	1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs547565	0.94[CHB][hapmap];0.80[ASN][1000 genomes]
rs548668	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs550382	1.00[CHB][hapmap];0.83[JPT][hapmap];0.97[ASN][1000 genomes]
rs553272	1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs555572	0.94[CHB][hapmap];0.88[CHD][hapmap]
rs555653	1.00[CHB][hapmap];0.91[CHD][hapmap]
rs556233	0.95[ASN][1000 genomes]
rs558959	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs562764	0.91[ASN][1000 genomes]
rs563656	0.94[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs569857	0.94[CHB][hapmap];0.80[ASN][1000 genomes]
rs572402	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs572483	0.94[CHB][hapmap]
rs572580	1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs572698	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs573096	0.97[ASN][1000 genomes]
rs578938	0.94[CHB][hapmap]
rs588913	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs590688	1.00[CHB][hapmap]
rs592080	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs600764	0.80[ASN][1000 genomes]
rs601046	1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs606789	1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs608995	0.93[ASN][1000 genomes]
rs618032	0.94[CHB][hapmap]
rs618972	0.94[CHB][hapmap]
rs620542	0.95[ASN][1000 genomes]
rs621152	0.95[ASN][1000 genomes]
rs635984	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs645213	0.97[ASN][1000 genomes]
rs653752	0.94[CHB][hapmap];0.85[CHD][hapmap]
rs657516	0.80[ASN][1000 genomes]
rs665617	0.88[CHB][hapmap]
rs666553	0.94[CHB][hapmap]
rs694070	0.94[CHB][hapmap]
rs7106686	0.94[CHB][hapmap]
rs7116336	0.89[CHB][hapmap];0.88[CHD][hapmap];0.85[YRI][hapmap]
rs7940695	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100905200-100935800	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:100905400-100997600	Weak transcription	Left Ventricle	heart
3	chr11:100914400-100935600	Weak transcription	Aorta	Aorta
4	chr11:100931200-100935200	Weak transcription	Ovary	ovary
5	chr11:100931400-100950400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr11:100932400-100937800	Weak transcription	Right Atrium	heart
7	chr11:100933400-100934400	Weak transcription	Fetal Heart	heart
8	chr11:100933400-100936800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:100934200-100934600	Enhancers	Right Ventricle	heart

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