Variant report

Variant	rs562764
Chromosome Location	chr11:100913860-100913861
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10895056	0.92[ASN][1000 genomes]
rs10895057	0.89[ASN][1000 genomes]
rs11224575	0.91[ASN][1000 genomes]
rs1144133	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1145455	0.80[EUR][1000 genomes]
rs1145460	0.95[ASN][1000 genomes]
rs1217845	0.82[ASN][1000 genomes]
rs1237696	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1379131	0.94[ASN][1000 genomes]
rs1824128	0.90[ASN][1000 genomes]
rs1893807	0.83[ASN][1000 genomes]
rs473409	0.94[ASN][1000 genomes]
rs474640	0.80[EUR][1000 genomes]
rs477266	0.80[EUR][1000 genomes]
rs478850	0.96[ASN][1000 genomes]
rs481883	0.80[EUR][1000 genomes]
rs483376	0.80[EUR][1000 genomes]
rs484389	0.96[ASN][1000 genomes]
rs486960	0.80[EUR][1000 genomes]
rs492827	0.96[ASN][1000 genomes]
rs495308	0.96[ASN][1000 genomes]
rs498370	0.96[ASN][1000 genomes]
rs499699	0.96[ASN][1000 genomes]
rs500760	0.96[ASN][1000 genomes]
rs503602	0.82[ASN][1000 genomes]
rs504372	0.96[ASN][1000 genomes]
rs504402	0.96[ASN][1000 genomes]
rs505229	0.95[ASN][1000 genomes]
rs511298	0.82[ASN][1000 genomes]
rs511484	0.96[ASN][1000 genomes]
rs518382	0.94[ASN][1000 genomes]
rs519220	0.80[EUR][1000 genomes]
rs521028	0.80[ASN][1000 genomes]
rs523630	0.96[ASN][1000 genomes]
rs526487	0.95[ASN][1000 genomes]
rs528566	0.96[ASN][1000 genomes]
rs535362	0.96[ASN][1000 genomes]
rs537120	0.80[EUR][1000 genomes]
rs538168	0.80[EUR][1000 genomes]
rs540622	0.94[ASN][1000 genomes]
rs540763	0.80[EUR][1000 genomes]
rs542491	0.96[ASN][1000 genomes]
rs545835	0.91[ASN][1000 genomes]
rs545838	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs546289	0.80[EUR][1000 genomes]
rs546763	0.96[ASN][1000 genomes]
rs547378	0.94[ASN][1000 genomes]
rs547565	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs548668	0.96[ASN][1000 genomes]
rs550382	0.94[ASN][1000 genomes]
rs550468	0.82[ASN][1000 genomes]
rs553272	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs556233	0.96[ASN][1000 genomes]
rs558959	0.96[ASN][1000 genomes]
rs561650	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs563656	0.96[ASN][1000 genomes]
rs569857	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs572402	0.96[ASN][1000 genomes]
rs572580	0.96[ASN][1000 genomes]
rs572698	0.96[ASN][1000 genomes]
rs573096	0.94[ASN][1000 genomes]
rs587955	0.80[ASN][1000 genomes]
rs588913	0.96[ASN][1000 genomes]
rs592080	0.96[ASN][1000 genomes]
rs598873	0.84[ASN][1000 genomes]
rs600678	0.80[EUR][1000 genomes]
rs600692	0.80[EUR][1000 genomes]
rs600764	0.81[ASN][1000 genomes]
rs601046	0.94[ASN][1000 genomes]
rs606789	0.96[ASN][1000 genomes]
rs608995	0.94[ASN][1000 genomes]
rs618972	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs620542	0.96[ASN][1000 genomes]
rs621152	0.96[ASN][1000 genomes]
rs635984	0.94[ASN][1000 genomes]
rs645213	0.94[ASN][1000 genomes]
rs648838	0.80[EUR][1000 genomes]
rs657516	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs660541	0.91[ASN][1000 genomes]
rs660912	0.80[EUR][1000 genomes]
rs665617	0.82[ASN][1000 genomes]
rs666553	0.82[ASN][1000 genomes]
rs7940695	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100905200-100935800	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:100905400-100920000	Weak transcription	Fetal Lung	lung
3	chr11:100905400-100997600	Weak transcription	Left Ventricle	heart
4	chr11:100913200-100919000	Weak transcription	Ovary	ovary
5	chr11:100913400-100914200	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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