Variant report

Variant	rs1893807
Chromosome Location	chr11:100927282-100927283
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100926600..100927336-chr11:101206798..101207521,2	MCF-7	breast:

Extended variants
information (count: 130 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:128)

rs_ID	r²[population]
rs10895056	0.80[ASN][1000 genomes]
rs10895058	0.83[ASN][1000 genomes]
rs10895063	0.86[ASN][1000 genomes]
rs10895065	0.84[ASN][1000 genomes]
rs11224580	0.83[ASN][1000 genomes]
rs11224589	0.86[ASN][1000 genomes]
rs11224592	0.86[ASN][1000 genomes]
rs11224593	0.86[ASN][1000 genomes]
rs11224594	0.84[ASN][1000 genomes]
rs11224598	0.85[ASN][1000 genomes]
rs11224599	0.80[ASN][1000 genomes]
rs1144133	0.99[ASN][1000 genomes]
rs1145455	0.84[ASN][1000 genomes]
rs1145464	0.88[ASN][1000 genomes]
rs11571159	0.81[ASN][1000 genomes]
rs11571171	0.87[ASN][1000 genomes]
rs1217845	0.93[ASN][1000 genomes]
rs1217860	0.86[ASN][1000 genomes]
rs1302679	0.90[ASN][1000 genomes]
rs1303052	0.88[ASN][1000 genomes]
rs1456764	0.84[ASN][1000 genomes]
rs1456765	0.84[ASN][1000 genomes]
rs1824126	0.85[ASN][1000 genomes]
rs1824127	0.86[ASN][1000 genomes]
rs474640	0.84[ASN][1000 genomes]
rs475902	0.81[ASN][1000 genomes]
rs477266	0.84[ASN][1000 genomes]
rs481495	0.84[ASN][1000 genomes]
rs481855	0.88[ASN][1000 genomes]
rs481883	0.84[ASN][1000 genomes]
rs483376	0.84[ASN][1000 genomes]
rs483493	0.85[ASN][1000 genomes]
rs483678	0.88[ASN][1000 genomes]
rs485506	0.88[ASN][1000 genomes]
rs486960	0.84[ASN][1000 genomes]
rs487271	0.88[ASN][1000 genomes]
rs488080	0.84[ASN][1000 genomes]
rs489034	0.90[ASN][1000 genomes]
rs491722	0.82[ASN][1000 genomes]
rs491893	0.83[ASN][1000 genomes]
rs492599	0.84[ASN][1000 genomes]
rs493508	0.84[ASN][1000 genomes]
rs494424	0.88[ASN][1000 genomes]
rs495384	0.81[ASN][1000 genomes]
rs495391	0.81[ASN][1000 genomes]
rs496208	0.81[ASN][1000 genomes]
rs498101	0.81[ASN][1000 genomes]
rs499664	0.90[ASN][1000 genomes]
rs503602	0.93[ASN][1000 genomes]
rs506045	0.84[ASN][1000 genomes]
rs506092	0.86[ASN][1000 genomes]
rs507044	0.88[ASN][1000 genomes]
rs508120	0.88[ASN][1000 genomes]
rs508533	0.81[ASN][1000 genomes]
rs508653	0.86[ASN][1000 genomes]
rs511298	0.93[ASN][1000 genomes]
rs513081	0.86[ASN][1000 genomes]
rs515059	0.88[ASN][1000 genomes]
rs516693	0.86[ASN][1000 genomes]
rs517930	0.84[ASN][1000 genomes]
rs518382	0.82[ASN][1000 genomes]
rs519220	0.83[ASN][1000 genomes]
rs521028	0.90[ASN][1000 genomes]
rs521744	0.81[ASN][1000 genomes]
rs522053	0.85[ASN][1000 genomes]
rs523323	0.86[ASN][1000 genomes]
rs528673	0.81[ASN][1000 genomes]
rs529775	0.86[ASN][1000 genomes]
rs531666	0.88[ASN][1000 genomes]
rs537120	0.84[ASN][1000 genomes]
rs538168	0.84[ASN][1000 genomes]
rs538915	0.88[ASN][1000 genomes]
rs540622	0.82[ASN][1000 genomes]
rs540763	0.84[ASN][1000 genomes]
rs542384	0.81[ASN][1000 genomes]
rs543215	0.80[ASN][1000 genomes]
rs545838	0.83[ASN][1000 genomes]
rs546289	0.83[ASN][1000 genomes]
rs547378	0.82[ASN][1000 genomes]
rs547565	0.99[ASN][1000 genomes]
rs550382	0.82[ASN][1000 genomes]
rs550468	0.93[ASN][1000 genomes]
rs553272	0.85[ASN][1000 genomes]
rs554101	0.85[ASN][1000 genomes]
rs555653	0.84[ASN][1000 genomes]
rs556238	0.81[ASN][1000 genomes]
rs557052	0.81[ASN][1000 genomes]
rs560527	0.83[ASN][1000 genomes]
rs561511	0.84[ASN][1000 genomes]
rs561572	0.84[ASN][1000 genomes]
rs561650	0.97[ASN][1000 genomes]
rs562764	0.83[ASN][1000 genomes]
rs564419	0.84[ASN][1000 genomes]
rs566761	0.84[ASN][1000 genomes]
rs569723	0.84[ASN][1000 genomes]
rs569857	0.99[ASN][1000 genomes]
rs569938	0.81[ASN][1000 genomes]
rs570078	0.83[ASN][1000 genomes]
rs572483	0.88[ASN][1000 genomes]
rs572775	0.90[ASN][1000 genomes]
rs573094	0.81[ASN][1000 genomes]
rs573096	0.82[ASN][1000 genomes]
rs578938	0.88[ASN][1000 genomes]
rs587955	0.90[ASN][1000 genomes]
rs590688	0.83[ASN][1000 genomes]
rs600678	0.84[ASN][1000 genomes]
rs600692	0.84[ASN][1000 genomes]
rs600837	0.86[ASN][1000 genomes]
rs601046	0.82[ASN][1000 genomes]
rs618032	0.81[ASN][1000 genomes]
rs618972	0.97[ASN][1000 genomes]
rs634179	0.86[ASN][1000 genomes]
rs635984	0.82[ASN][1000 genomes]
rs645213	0.82[ASN][1000 genomes]
rs647420	0.81[ASN][1000 genomes]
rs648838	0.84[ASN][1000 genomes]
rs651977	0.83[ASN][1000 genomes]
rs653752	0.83[ASN][1000 genomes]
rs657516	0.99[ASN][1000 genomes]
rs660912	0.84[ASN][1000 genomes]
rs664882	0.84[ASN][1000 genomes]
rs665617	0.93[ASN][1000 genomes]
rs666553	0.93[ASN][1000 genomes]
rs685828	0.88[ASN][1000 genomes]
rs694070	0.86[ASN][1000 genomes]
rs694317	0.90[ASN][1000 genomes]
rs7106686	0.84[ASN][1000 genomes]
rs73573609	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100905200-100935800	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:100905400-100997600	Weak transcription	Left Ventricle	heart
3	chr11:100914400-100935600	Weak transcription	Aorta	Aorta
4	chr11:100918800-100930800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:100927200-100927400	Enhancers	Ovary	ovary

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