Variant report

Variant	rs550468
Chromosome Location	chr11:100939638-100939639
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10895058	0.90[ASN][1000 genomes]
rs10895063	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10895065	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11224580	0.90[ASN][1000 genomes]
rs11224589	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11224592	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11224593	0.89[ASN][1000 genomes]
rs11224594	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11224598	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11224599	0.85[ASN][1000 genomes]
rs1144133	0.94[ASN][1000 genomes]
rs1145464	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11571159	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11571171	0.90[ASN][1000 genomes]
rs1217845	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1217860	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12225081	0.86[ASN][1000 genomes]
rs1302679	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1303052	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1456764	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1456765	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1824126	0.93[ASN][1000 genomes]
rs1824127	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1893807	0.93[ASN][1000 genomes]
rs481855	0.96[ASN][1000 genomes]
rs483493	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs483678	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs485506	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs486992	0.82[ASN][1000 genomes]
rs487271	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs489034	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs491893	0.90[ASN][1000 genomes]
rs494424	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs499664	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs503602	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs506092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs507044	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs508120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs508533	0.88[ASN][1000 genomes]
rs508653	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs511298	0.87[ASN][1000 genomes]
rs513081	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs515059	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs516693	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs518382	0.81[ASN][1000 genomes]
rs521028	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs522053	0.92[ASN][1000 genomes]
rs523323	0.94[ASN][1000 genomes]
rs529359	0.81[ASN][1000 genomes]
rs529775	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs531666	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs537681	0.81[ASN][1000 genomes]
rs538915	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs540622	0.81[ASN][1000 genomes]
rs542384	0.88[ASN][1000 genomes]
rs543215	0.87[ASN][1000 genomes]
rs545838	0.82[ASN][1000 genomes]
rs547378	0.81[ASN][1000 genomes]
rs547565	0.94[ASN][1000 genomes]
rs550382	0.81[ASN][1000 genomes]
rs553272	0.84[ASN][1000 genomes]
rs554101	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs555653	0.91[ASN][1000 genomes]
rs560527	0.90[ASN][1000 genomes]
rs561650	0.91[ASN][1000 genomes]
rs562764	0.82[ASN][1000 genomes]
rs566351	0.82[ASN][1000 genomes]
rs569857	0.94[ASN][1000 genomes]
rs569938	0.82[ASN][1000 genomes]
rs572483	0.96[ASN][1000 genomes]
rs572775	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs572943	0.90[EUR][1000 genomes]
rs573096	0.81[ASN][1000 genomes]
rs578938	0.96[ASN][1000 genomes]
rs587955	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs590688	0.90[ASN][1000 genomes]
rs600837	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs601046	0.81[ASN][1000 genomes]
rs613120	0.87[ASN][1000 genomes]
rs618032	0.88[ASN][1000 genomes]
rs618972	0.91[ASN][1000 genomes]
rs634179	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs635984	0.81[ASN][1000 genomes]
rs645213	0.81[ASN][1000 genomes]
rs651977	0.90[ASN][1000 genomes]
rs653752	0.90[ASN][1000 genomes]
rs657516	0.94[ASN][1000 genomes]
rs665617	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs666553	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs685828	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs694070	0.94[ASN][1000 genomes]
rs694317	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7106686	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7116336	0.84[ASN][1000 genomes]
rs73573609	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2753307	chr11:100935929-100948110	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100905400-100997600	Weak transcription	Left Ventricle	heart
2	chr11:100931400-100950400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:100937400-100953800	Weak transcription	Aorta	Aorta
4	chr11:100938000-100940400	Weak transcription	Ovary	ovary
5	chr11:100938000-100940800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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