Variant report

Variant	rs561650
Chromosome Location	chr11:100915894-100915895
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 162 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:160)

rs_ID	r²[population]
rs10895058	0.82[ASN][1000 genomes]
rs10895063	0.85[ASN][1000 genomes]
rs10895065	0.83[ASN][1000 genomes]
rs11224580	0.82[ASN][1000 genomes]
rs11224589	0.85[ASN][1000 genomes]
rs11224592	0.85[ASN][1000 genomes]
rs11224593	0.85[ASN][1000 genomes]
rs11224594	0.83[ASN][1000 genomes]
rs11224598	0.84[ASN][1000 genomes]
rs1144133	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1145455	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1145460	0.82[ASN][1000 genomes]
rs1145464	0.87[ASN][1000 genomes]
rs11571159	0.80[ASN][1000 genomes]
rs11571171	0.86[ASN][1000 genomes]
rs1217845	0.91[ASN][1000 genomes]
rs1217860	0.85[ASN][1000 genomes]
rs1302679	0.89[ASN][1000 genomes]
rs1303052	0.87[ASN][1000 genomes]
rs1379131	0.81[ASN][1000 genomes]
rs1456764	0.83[ASN][1000 genomes]
rs1456765	0.83[ASN][1000 genomes]
rs1824126	0.84[ASN][1000 genomes]
rs1824127	0.85[ASN][1000 genomes]
rs1893807	0.97[ASN][1000 genomes]
rs472274	0.82[ASN][1000 genomes]
rs473409	0.81[ASN][1000 genomes]
rs474640	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs475902	0.84[ASN][1000 genomes]
rs477266	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs478850	0.83[ASN][1000 genomes]
rs481495	0.87[ASN][1000 genomes]
rs481855	0.87[ASN][1000 genomes]
rs481883	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs483376	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs483493	0.84[ASN][1000 genomes]
rs483678	0.87[ASN][1000 genomes]
rs484389	0.83[ASN][1000 genomes]
rs485506	0.87[ASN][1000 genomes]
rs486960	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs487271	0.87[ASN][1000 genomes]
rs488080	0.87[ASN][1000 genomes]
rs489034	0.89[ASN][1000 genomes]
rs491722	0.85[ASN][1000 genomes]
rs491893	0.82[ASN][1000 genomes]
rs492599	0.87[ASN][1000 genomes]
rs492827	0.83[ASN][1000 genomes]
rs493508	0.87[ASN][1000 genomes]
rs494424	0.87[ASN][1000 genomes]
rs495308	0.83[ASN][1000 genomes]
rs495384	0.84[ASN][1000 genomes]
rs495391	0.84[ASN][1000 genomes]
rs496208	0.84[ASN][1000 genomes]
rs498101	0.84[ASN][1000 genomes]
rs498370	0.83[ASN][1000 genomes]
rs499664	0.89[ASN][1000 genomes]
rs499699	0.83[ASN][1000 genomes]
rs500327	0.83[ASN][1000 genomes]
rs500760	0.83[ASN][1000 genomes]
rs503602	0.91[ASN][1000 genomes]
rs504372	0.83[ASN][1000 genomes]
rs504402	0.83[ASN][1000 genomes]
rs505229	0.82[ASN][1000 genomes]
rs506045	0.87[ASN][1000 genomes]
rs506092	0.85[ASN][1000 genomes]
rs507044	0.87[ASN][1000 genomes]
rs508120	0.87[ASN][1000 genomes]
rs508653	0.85[ASN][1000 genomes]
rs511298	0.96[ASN][1000 genomes]
rs511484	0.83[ASN][1000 genomes]
rs513081	0.85[ASN][1000 genomes]
rs515059	0.87[ASN][1000 genomes]
rs516693	0.85[ASN][1000 genomes]
rs517930	0.87[ASN][1000 genomes]
rs518382	0.81[ASN][1000 genomes]
rs519220	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs521028	0.89[ASN][1000 genomes]
rs521744	0.84[ASN][1000 genomes]
rs522053	0.84[ASN][1000 genomes]
rs523323	0.85[ASN][1000 genomes]
rs523630	0.83[ASN][1000 genomes]
rs523670	0.83[ASN][1000 genomes]
rs525522	0.83[ASN][1000 genomes]
rs526487	0.82[ASN][1000 genomes]
rs528566	0.83[ASN][1000 genomes]
rs528673	0.84[ASN][1000 genomes]
rs529775	0.85[ASN][1000 genomes]
rs531666	0.87[ASN][1000 genomes]
rs535362	0.83[ASN][1000 genomes]
rs537120	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs538168	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs538915	0.87[ASN][1000 genomes]
rs540622	0.81[ASN][1000 genomes]
rs540763	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs542491	0.83[ASN][1000 genomes]
rs545838	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs546289	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs546763	0.83[ASN][1000 genomes]
rs547378	0.81[ASN][1000 genomes]
rs547565	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs548668	0.83[ASN][1000 genomes]
rs550382	0.81[ASN][1000 genomes]
rs550468	0.91[ASN][1000 genomes]
rs553272	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs554101	0.84[ASN][1000 genomes]
rs555653	0.83[ASN][1000 genomes]
rs556233	0.83[ASN][1000 genomes]
rs556238	0.84[ASN][1000 genomes]
rs557052	0.84[ASN][1000 genomes]
rs558959	0.83[ASN][1000 genomes]
rs560527	0.82[ASN][1000 genomes]
rs561511	0.87[ASN][1000 genomes]
rs561572	0.87[ASN][1000 genomes]
rs562764	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs563656	0.83[ASN][1000 genomes]
rs564419	0.87[ASN][1000 genomes]
rs566761	0.87[ASN][1000 genomes]
rs569723	0.87[ASN][1000 genomes]
rs569857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs570078	0.86[ASN][1000 genomes]
rs572402	0.83[ASN][1000 genomes]
rs572483	0.87[ASN][1000 genomes]
rs572580	0.83[ASN][1000 genomes]
rs572698	0.83[ASN][1000 genomes]
rs572775	0.89[ASN][1000 genomes]
rs573094	0.84[ASN][1000 genomes]
rs573096	0.81[ASN][1000 genomes]
rs578938	0.87[ASN][1000 genomes]
rs587955	0.89[ASN][1000 genomes]
rs588913	0.83[ASN][1000 genomes]
rs589447	0.81[ASN][1000 genomes]
rs590688	0.82[ASN][1000 genomes]
rs592080	0.83[ASN][1000 genomes]
rs600678	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs600692	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs600837	0.85[ASN][1000 genomes]
rs601046	0.81[ASN][1000 genomes]
rs606789	0.83[ASN][1000 genomes]
rs608995	0.81[ASN][1000 genomes]
rs618972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs620542	0.83[ASN][1000 genomes]
rs621152	0.83[ASN][1000 genomes]
rs634179	0.85[ASN][1000 genomes]
rs635984	0.81[ASN][1000 genomes]
rs645213	0.81[ASN][1000 genomes]
rs647420	0.84[ASN][1000 genomes]
rs648838	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs651977	0.82[ASN][1000 genomes]
rs653752	0.82[ASN][1000 genomes]
rs657516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs660912	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs664882	0.87[ASN][1000 genomes]
rs665617	0.91[ASN][1000 genomes]
rs666553	0.91[ASN][1000 genomes]
rs680670	0.82[ASN][1000 genomes]
rs685828	0.87[ASN][1000 genomes]
rs694070	0.85[ASN][1000 genomes]
rs694317	0.89[ASN][1000 genomes]
rs7106686	0.83[ASN][1000 genomes]
rs73573609	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100905200-100935800	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:100905400-100920000	Weak transcription	Fetal Lung	lung
3	chr11:100905400-100997600	Weak transcription	Left Ventricle	heart
4	chr11:100913200-100919000	Weak transcription	Ovary	ovary
5	chr11:100914200-100918000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:100914400-100935600	Weak transcription	Aorta	Aorta
7	chr11:100914600-100916400	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links