Variant report

Variant	rs598873
Chromosome Location	chr11:100887189-100887190
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 141 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:138)

rs_ID	r²[population]
rs10895057	0.85[CHD][hapmap];0.89[JPT][hapmap]
rs10895063	0.82[CHB][hapmap]
rs10895065	0.82[CHB][hapmap]
rs11224575	0.94[JPT][hapmap]
rs11224580	0.81[CHD][hapmap]
rs11224589	0.87[CHB][hapmap]
rs11224592	0.82[CHB][hapmap]
rs11224598	0.82[CHB][hapmap];0.82[CHD][hapmap]
rs1144133	0.82[CHB][hapmap];0.81[CHD][hapmap];0.83[JPT][hapmap]
rs1145455	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1145460	0.82[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs11571171	0.82[CHB][hapmap]
rs1379131	0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs1456765	0.82[CHB][hapmap]
rs1824126	0.82[CHB][hapmap]
rs1824128	0.85[CHD][hapmap];0.89[JPT][hapmap]
rs472274	0.84[ASN][1000 genomes]
rs473409	0.85[ASN][1000 genomes]
rs474640	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs475902	0.86[ASN][1000 genomes]
rs476308	0.82[ASN][1000 genomes]
rs477266	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs478850	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs481495	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs481855	0.82[CHB][hapmap];0.82[CHD][hapmap]
rs481883	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs483376	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs484389	0.88[CHD][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs486578	0.82[ASN][1000 genomes]
rs486960	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs486992	0.82[CHD][hapmap]
rs487426	0.82[ASN][1000 genomes]
rs488080	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs489397	0.84[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs491722	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs492599	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs492827	0.88[CHD][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs493038	0.82[ASN][1000 genomes]
rs493508	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs495029	0.84[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs495308	0.83[ASN][1000 genomes]
rs495384	0.86[ASN][1000 genomes]
rs495391	0.86[ASN][1000 genomes]
rs496208	0.86[ASN][1000 genomes]
rs498101	0.86[ASN][1000 genomes]
rs498370	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs499699	0.83[ASN][1000 genomes]
rs500327	0.85[ASN][1000 genomes]
rs500760	0.91[CHD][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs503602	0.82[CHB][hapmap];0.82[CHD][hapmap]
rs504372	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs504402	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs505229	0.82[ASN][1000 genomes]
rs506045	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs508653	0.82[CHB][hapmap]
rs511298	0.85[CHD][hapmap];0.83[JPT][hapmap]
rs511484	0.83[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs516693	0.82[CHB][hapmap]
rs516895	0.84[CHB][hapmap];0.88[CHD][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs517930	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs518382	0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs519220	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs521744	0.86[ASN][1000 genomes]
rs522053	0.85[CHD][hapmap]
rs523323	0.87[CHB][hapmap]
rs523332	0.84[CHB][hapmap];0.88[CHD][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs523630	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs523670	0.85[ASN][1000 genomes]
rs525522	0.85[ASN][1000 genomes]
rs526487	0.84[ASN][1000 genomes]
rs528566	0.83[ASN][1000 genomes]
rs528673	0.86[ASN][1000 genomes]
rs535362	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs537120	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs538168	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs538915	0.82[CHB][hapmap]
rs540622	0.88[CHD][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs540763	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs542491	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs543215	0.81[CHD][hapmap]
rs545835	0.89[JPT][hapmap]
rs545838	0.84[ASN][1000 genomes]
rs546289	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs546763	0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs547378	0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs547565	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs548113	0.81[ASN][1000 genomes]
rs548668	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs550382	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs553272	0.88[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs555572	0.82[CHB][hapmap];0.82[CHD][hapmap]
rs555653	0.85[CHD][hapmap]
rs556233	0.83[ASN][1000 genomes]
rs556238	0.86[ASN][1000 genomes]
rs557052	0.86[ASN][1000 genomes]
rs558959	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs561511	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs561572	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs562764	0.84[ASN][1000 genomes]
rs563656	0.83[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs564419	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs566761	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs569723	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs569857	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs570078	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs572402	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs572483	0.82[CHB][hapmap]
rs572580	0.85[CHD][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs572698	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs573094	0.86[ASN][1000 genomes]
rs573096	0.81[ASN][1000 genomes]
rs574434	0.82[ASN][1000 genomes]
rs578938	0.82[CHB][hapmap]
rs588913	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs589447	0.84[ASN][1000 genomes]
rs592080	0.81[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs600678	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs600692	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs600764	0.96[ASN][1000 genomes]
rs601046	0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs606789	0.88[CHD][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs608995	0.85[ASN][1000 genomes]
rs618032	0.83[JPT][hapmap]
rs618972	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs620542	0.83[ASN][1000 genomes]
rs621152	0.83[ASN][1000 genomes]
rs635984	0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs645213	0.81[ASN][1000 genomes]
rs647420	0.86[ASN][1000 genomes]
rs648838	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs660541	0.88[CHD][hapmap];0.89[JPT][hapmap]
rs660912	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs664882	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs666553	0.82[CHB][hapmap]
rs680670	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs694070	0.82[CHB][hapmap]
rs7106686	0.82[CHB][hapmap]
rs7116336	0.82[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1036546	chr11:100869056-100893542	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100882200-100887400	Weak transcription	Ovary	ovary

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