Variant report

Variant	rs6606588
Chromosome Location	chr9:140316819-140316820
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RFX5	chr9:140316793-140317185	Hela-S3	cervix:	n/a	n/a
2	CHD1	chr9:140316506-140317953	IMR90	lung:	n/a	chr9:140317444-140317454
3	MAZ	chr9:140316269-140318840	IMR90	lung:	n/a	chr9:140318358-140318368
4	SMC3	chr9:140316491-140318444	SK-N-SH	brain:	n/a	n/a
5	STAT3	chr9:140316752-140317095	MCF10A-Er-Src	breast:	n/a	n/a
6	HCFC1	chr9:140316535-140319477	Hela-S3	cervix:	n/a	n/a
7	SREBP1	chr9:140316696-140318181	GM12878	blood:	n/a	n/a
8	CUX1	chr9:140316518-140316995	K562	blood:	n/a	chr9:140316681-140316695
9	TBL1XR1	chr9:140316588-140317129	K562	blood:	n/a	n/a
10	POLR2A	chr9:140316786-140318739	Hela-S3	cervix:	n/a	n/a
11	GABPA	chr9:140316771-140318103	MCF-7	breast:	n/a	chr9:140317669-140317678
12	REST	chr9:140316803-140317899	H1-neurons	neurons:	n/a	chr9:140317333-140317343
13	MAX	chr9:140316716-140318399	ECC-1	luminal epithelium:	n/a	chr9:140318358-140318368
14	EP300	chr9:140316747-140318060	ECC-1	luminal epithelium:	n/a	chr9:140317724-140317733 chr9:140317340-140317356 chr9:140317426-140317442 chr9:140317456-140317469
15	MXI1	chr9:140316592-140318336	IMR90	lung:	n/a	n/a
16	POLR2A	chr9:140316801-140318091	K562	blood:	n/a	n/a
17	JUN	chr9:140316699-140319986	K562	blood:	n/a	chr9:140318374-140318384 chr9:140318301-140318310 chr9:140318373-140318385 chr9:140317114-140317125 chr9:140318374-140318384 chr9:140318374-140318384 chr9:140318374-140318383 chr9:140318374-140318384
18	POLR2A	chr9:140316796-140318016	K562	blood:	n/a	n/a
19	MXI1	chr9:140316646-140318524	SK-N-SH	brain:	n/a	n/a
20	CTCF	chr9:140316658-140318360	SK-N-SH	brain:	n/a	chr9:140317216-140317229 chr9:140317150-140317163
21	POLR2A	chr9:140316814-140317922	HUVEC	blood vessel:	n/a	n/a
22	RUNX3	chr9:140316624-140317291	GM12878	blood:	n/a	n/a
23	MAX	chr9:140316768-140318511	K562	blood:	n/a	chr9:140318358-140318368
24	ZEB1	chr9:140316749-140318114	HepG2	liver:	n/a	n/a
25	MAX	chr9:140316789-140318515	Hela-S3	cervix:	n/a	chr9:140318358-140318368
26	MAX	chr9:140316740-140318670	MCF-7	breast:	n/a	chr9:140318358-140318368
27	MAX	chr9:140316806-140317006	H1-hESC	embryonic stem cell:	n/a	n/a
28	POLR2A	chr9:140316702-140318160	ECC-1	luminal epithelium:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:140315974..140319216-chr9:140351199..140355551,4	MCF-7	breast:
2	chr11:10830044..10830763-chr9:140316686..140317504,2	Hela-S3	cervix:
3	chr9:140193633..140197906-chr9:140314272..140320023,12	K562	blood:
4	chr9:140179155..140181725-chr9:140315716..140318022,2	K562	blood:
5	chr9:140149326..140151125-chr9:140315178..140319287,3	MCF-7	breast:
6	chr9:140316449..140319245-chr9:140352297..140354187,2	K562	blood:
7	chr9:139619134..139621860-chr9:140316424..140318668,2	MCF-7	breast:
8	chr9:140135021..140137503-chr9:140316214..140317833,2	K562	blood:
9	chr7:32535156..32535851-chr9:140316584..140317280,2	Hela-S3	cervix:
10	chr9:140316188..140319616-chr9:140334398..140338058,5	MCF-7	breast:
11	chr9:140188697..140191743-chr9:140316261..140319603,8	MCF-7	breast:
12	chr9:140189812..140190347-chr9:140316800..140317443,2	MCF-7	breast:
13	chr9:140191868..140203757-chr9:140310976..140322315,40	MCF-7	breast:
14	chr9:140316257..140317769-chr9:140352568..140355064,2	K562	blood:
15	chr9:140192198..140198165-chr9:140316235..140327530,20	K562	blood:
16	chr9:91926099..91927071-chr9:140316689..140317403,2	Hela-S3	cervix:
17	chr17:33478168..33478671-chr9:140316687..140317207,2	MCF-7	breast:
18	chr9:140288704..140290214-chr9:140315490..140318385,2	MCF-7	breast:
19	chr9:140188726..140191932-chr9:140314389..140319176,4	K562	blood:
20	chr9:140187746..140203383-chr9:140313735..140333462,78	MCF-7	breast:
21	chr9:140188701..140191800-chr9:140314847..140316893,3	K562	blood:
22	chr9:140316329..140318019-chr9:140348495..140350237,2	K562	blood:

Variant related genes	Relation type
NOXA1	TF binding region
ENSG00000188833	Chromatin interaction
ENSG00000165802	Chromatin interaction
ENSG00000105778	Chromatin interaction
ENSG00000198435	Chromatin interaction
ENSG00000188986	Chromatin interaction
ENSG00000110321	Chromatin interaction
ENSG00000187609	Chromatin interaction
ENSG00000123975	Chromatin interaction
ENSG00000233016	Chromatin interaction
ENSG00000260996	Chromatin interaction
ENSG00000188229	Chromatin interaction
ENSG00000270259	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11516128	0.87[ASW][hapmap];0.88[CEU][hapmap];0.97[GIH][hapmap];0.92[LWK][hapmap];0.86[MEX][hapmap];0.84[MKK][hapmap];0.84[TSI][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes]
rs11534413	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11534414	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11534415	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11535664	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11537106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11562621	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28553346	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28580293	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28649497	0.87[CEU][hapmap];0.95[MEX][hapmap];0.82[MKK][hapmap];0.92[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28725243	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28787940	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35138580	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6422889	0.88[CEU][hapmap];0.97[GIH][hapmap];0.86[MEX][hapmap];0.84[TSI][hapmap]
rs6422890	0.88[CEU][hapmap];0.97[GIH][hapmap];0.87[MEX][hapmap]
rs6606590	0.82[GIH][hapmap]
rs67640500	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9414737	0.88[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.80[MKK][hapmap]
rs9694983	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9695429	1.00[ASW][hapmap];0.90[CHB][hapmap];0.85[CHD][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9697151	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9802418	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:65 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894442	chr9:139544437-140462099	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
2	nsv894452	chr9:139598108-140523429	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
3	nsv894455	chr9:139607966-140411547	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	417 gene(s)	inside rSNPs	diseases
4	nsv894463	chr9:139683224-140411547	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
5	nsv524322	chr9:139690144-140376668	Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	371 gene(s)	inside rSNPs	diseases
6	nsv894470	chr9:139693992-140339091	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
7	nsv894474	chr9:139694521-140432318	Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	374 gene(s)	inside rSNPs	diseases
8	nsv540352	chr9:139695108-140351178	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
9	nsv894484	chr9:139709976-140382705	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	360 gene(s)	inside rSNPs	diseases
10	nsv894485	chr9:139709976-140408904	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
11	nsv894486	chr9:139725120-140382705	Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	359 gene(s)	inside rSNPs	diseases
12	nsv894487	chr9:139725120-140449582	Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
13	nsv894498	chr9:139810595-140339091	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	324 gene(s)	inside rSNPs	diseases
14	nsv894499	chr9:139810595-140734161	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
15	nsv894501	chr9:139823670-140400275	Genic enhancers Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
16	nsv894502	chr9:139823670-140487108	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
17	esv1823555	chr9:139834714-140362439	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	336 gene(s)	inside rSNPs	diseases
18	nsv894522	chr9:139860631-140411547	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	331 gene(s)	inside rSNPs	diseases
19	nsv894523	chr9:139860631-140462099	Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
20	nsv894553	chr9:139879170-140318758	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
21	nsv894554	chr9:139879170-140339091	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
22	nsv894556	chr9:139904037-140408904	Active TSS Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
23	nsv894562	chr9:139906359-140382705	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	307 gene(s)	inside rSNPs	diseases
24	nsv894563	chr9:139906359-140408904	Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
25	nsv894564	chr9:139906359-140432318	Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
26	nsv894583	chr9:139950351-140382705	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	297 gene(s)	inside rSNPs	diseases
27	nsv894584	chr9:139950351-140400275	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	298 gene(s)	inside rSNPs	diseases
28	nsv894588	chr9:139963091-140372570	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	295 gene(s)	inside rSNPs	diseases
29	nsv894606	chr9:140018138-140368860	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
30	nsv894607	chr9:140018138-140382705	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
31	nsv894608	chr9:140018138-140392494	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
32	nsv894609	chr9:140018138-140400275	Enhancers Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	275 gene(s)	inside rSNPs	diseases
33	nsv894610	chr9:140018138-140408904	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	277 gene(s)	inside rSNPs	diseases
34	nsv894624	chr9:140068342-140318758	Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	253 gene(s)	inside rSNPs	diseases
35	nsv894625	chr9:140068342-140339091	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	253 gene(s)	inside rSNPs	diseases
36	nsv894626	chr9:140068342-140368860	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	268 gene(s)	inside rSNPs	diseases
37	nsv894627	chr9:140068342-140382705	Genic enhancers Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	268 gene(s)	inside rSNPs	diseases
38	nsv894628	chr9:140068342-140400275	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	269 gene(s)	inside rSNPs	diseases
39	nsv894638	chr9:140094605-140368860	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	254 gene(s)	inside rSNPs	diseases
40	nsv531664	chr9:140110329-140725056	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	275 gene(s)	inside rSNPs	diseases
41	nsv531654	chr9:140110329-141033187	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	281 gene(s)	inside rSNPs	diseases
42	esv1824250	chr9:140118448-140390615	Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	230 gene(s)	inside rSNPs	diseases
43	nsv894643	chr9:140153851-140318758	Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
44	nsv894645	chr9:140165584-140408904	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
45	esv1824017	chr9:140197784-140341751	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
46	esv2758205	chr9:140197784-140341751	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
47	esv2759721	chr9:140197784-140341751	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
48	nsv1047563	chr9:140219047-140560852	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
49	nsv540357	chr9:140219047-140560852	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
50	nsv894653	chr9:140228092-140343189	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6606588	NOXA1	cis	Stomach	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:140316000-140317000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr9:140316200-140317000	Flanking Active TSS	Primary hematopoietic stem cells	blood
3	chr9:140316200-140317000	Flanking Active TSS	Hela-S3	cervix
4	chr9:140316200-140317200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
5	chr9:140316200-140317200	Flanking Active TSS	Fetal Brain Male	brain
6	chr9:140316200-140318000	Active TSS	Sigmoid Colon	Sigmoid Colon
7	chr9:140316200-140318600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:140316400-140317000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:140316400-140317000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:140316400-140317000	Flanking Active TSS	Duodenum Mucosa	Duodenum
11	chr9:140316400-140317000	Active TSS	Fetal Brain Female	brain
12	chr9:140316400-140317000	Flanking Active TSS	HUVEC	blood vessel
13	chr9:140316400-140317000	Flanking Active TSS	NH-A	brain
14	chr9:140316400-140317000	Flanking Active TSS	NHEK	skin
15	chr9:140316400-140317200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr9:140316400-140317200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr9:140316400-140317200	Flanking Active TSS	Adipose Nuclei	Adipose
18	chr9:140316400-140317200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
19	chr9:140316400-140317200	Flanking Active TSS	Stomach Smooth Muscle	stomach
20	chr9:140316400-140317600	Active TSS	GM12878-XiMat	blood
21	chr9:140316400-140318000	Active TSS	HUES48 Cell Line	embryonic stem cell
22	chr9:140316400-140318000	Active TSS	HUES64 Cell Line	embryonic stem cell
23	chr9:140316400-140318000	Active TSS	iPS-18 Cell Line	embryonic stem cell
24	chr9:140316400-140318200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr9:140316400-140318600	Active TSS	A549	lung
26	chr9:140316400-140318600	Active TSS	NHLF	lung
27	chr9:140316600-140317000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr9:140316600-140317000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
29	chr9:140316600-140317000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
30	chr9:140316600-140317000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
31	chr9:140316600-140317000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
32	chr9:140316600-140317000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
33	chr9:140316600-140317000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr9:140316600-140317000	Flanking Active TSS	Liver	Liver
35	chr9:140316600-140317000	Flanking Active TSS	Brain Angular Gyrus	brain
36	chr9:140316600-140317000	Flanking Active TSS	Brain Anterior Caudate	brain
37	chr9:140316600-140317000	Flanking Active TSS	Brain Cingulate Gyrus	brain
38	chr9:140316600-140317000	Active TSS	Brain Germinal Matrix	brain
39	chr9:140316600-140317000	Flanking Active TSS	Brain Hippocampus Middle	brain
40	chr9:140316600-140317000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
41	chr9:140316600-140317000	Flanking Active TSS	Brain Substantia Nigra	brain
42	chr9:140316600-140317000	Flanking Active TSS	Colon Smooth Muscle	Colon
43	chr9:140316600-140317000	Flanking Active TSS	Fetal Intestine Small	intestine
44	chr9:140316600-140317000	Flanking Active TSS	Fetal Muscle Leg	muscle
45	chr9:140316600-140317000	Flanking Active TSS	Fetal Stomach	stomach
46	chr9:140316600-140317000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
47	chr9:140316600-140317000	Flanking Active TSS	Rectal Smooth Muscle	rectum
48	chr9:140316600-140317000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
49	chr9:140316600-140317000	Flanking Active TSS	HMEC	breast
50	chr9:140316600-140317000	Flanking Active TSS	NHDF-Ad	bronchial

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