Variant report

Variant	rs6611648
Chromosome Location	chrX:57930655-57930656
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:57929160..57931997-chrX:57934449..57937340,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZXDB-3	chrX:57925278-57930797	NONHSAT137292

Variant related genes	Relation type
ENSG00000198205	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12396496	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap]
rs5988686	1.00[YRI][hapmap]
rs5988955	1.00[ASW][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap]
rs6521661	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs6521662	1.00[YRI][hapmap]
rs6521663	0.81[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs6521664	1.00[YRI][hapmap]
rs7064183	1.00[TSI][hapmap]
rs7064361	1.00[TSI][hapmap]
rs9699133	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753356	chrX:57526389-58283218	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv930980	chrX:57672946-58544094	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv916972	chrX:57704902-58005999	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv993422	chrX:57844012-58544094	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv518933	chrX:57913685-57942553	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv915796	chrX:57926505-58544094	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:57925200-57932800	Weak transcription	Psoas Muscle	Psoas
2	chrX:57926800-57931000	Weak transcription	Brain Hippocampus Middle	brain
3	chrX:57926800-57931600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chrX:57927600-57930800	Weak transcription	Adipose Nuclei	Adipose
5	chrX:57927600-57932600	Weak transcription	Rectal Smooth Muscle	rectum
6	chrX:57927600-57932600	Weak transcription	Dnd41	blood
7	chrX:57927600-57936400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chrX:57927800-57931400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chrX:57927800-57931600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chrX:57927800-57931800	Weak transcription	Right Atrium	heart
11	chrX:57927800-57932800	Weak transcription	HSMMtube	muscle
12	chrX:57927800-57933000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chrX:57927800-57935400	Weak transcription	NHEK	skin
14	chrX:57928200-57931400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chrX:57928200-57933800	Weak transcription	HSMM	muscle
16	chrX:57928600-57930800	Weak transcription	HUVEC	blood vessel
17	chrX:57929400-57932800	Weak transcription	Colon Smooth Muscle	Colon
18	chrX:57929800-57935800	Weak transcription	Fetal Intestine Small	intestine
19	chrX:57930000-57931000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chrX:57930000-57932800	Weak transcription	Fetal Lung	lung
21	chrX:57930200-57931000	Enhancers	Brain Angular Gyrus	brain
22	chrX:57930200-57931400	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chrX:57930400-57931200	Enhancers	Brain Cingulate Gyrus	brain
24	chrX:57930400-57936000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chrX:57930600-57931000	Enhancers	Pancreatic Islets	Pancreatic Islet
26	chrX:57930600-57931400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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