Variant report

Variant	rs9699133
Chromosome Location	chrX:57934647-57934648
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:57618288..57620414-chrX:57932796..57935174,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12396496	1.00[MEX][hapmap]
rs5988955	1.00[MEX][hapmap]
rs6521661	1.00[MEX][hapmap]
rs6521663	1.00[MEX][hapmap]
rs6611648	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753356	chrX:57526389-58283218	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv930980	chrX:57672946-58544094	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv916972	chrX:57704902-58005999	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv993422	chrX:57844012-58544094	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv518933	chrX:57913685-57942553	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv915796	chrX:57926505-58544094	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:57927600-57936400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chrX:57927800-57935400	Weak transcription	NHEK	skin
3	chrX:57929800-57935800	Weak transcription	Fetal Intestine Small	intestine
4	chrX:57930400-57936000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chrX:57931200-57935600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chrX:57931200-57935600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chrX:57931200-57935800	Weak transcription	Esophagus	oesophagus
8	chrX:57931600-57934800	Enhancers	Hela-S3	cervix
9	chrX:57932000-57935600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chrX:57932200-57935400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chrX:57932800-57935600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
12	chrX:57933200-57935600	Weak transcription	NHDF-Ad	bronchial
13	chrX:57933200-57935800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chrX:57933400-57935200	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chrX:57933400-57935600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chrX:57933400-57935600	Weak transcription	Brain Germinal Matrix	brain
17	chrX:57933400-57935800	Weak transcription	Ovary	ovary
18	chrX:57933600-57935400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chrX:57933600-57935600	Weak transcription	Primary T cells from cord blood	blood
20	chrX:57933600-57935600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chrX:57933600-57935600	Weak transcription	Brain Anterior Caudate	brain
22	chrX:57933600-57935600	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chrX:57933600-57935600	Weak transcription	Psoas Muscle	Psoas
24	chrX:57933600-57935800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chrX:57933600-57937000	Weak transcription	Fetal Lung	lung
26	chrX:57933800-57935200	Weak transcription	Stomach Smooth Muscle	stomach
27	chrX:57933800-57935400	Weak transcription	Duodenum Mucosa	Duodenum
28	chrX:57933800-57935400	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chrX:57933800-57935600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chrX:57933800-57935600	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chrX:57933800-57935600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chrX:57933800-57935600	Weak transcription	Brain Angular Gyrus	brain
33	chrX:57933800-57935600	Weak transcription	Fetal Brain Male	brain
34	chrX:57933800-57935600	Weak transcription	Right Atrium	heart
35	chrX:57933800-57935600	Weak transcription	HSMMtube	muscle
36	chrX:57933800-57935800	Weak transcription	Fetal Brain Female	brain
37	chrX:57934000-57935200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chrX:57934000-57937200	Weak transcription	Stomach Mucosa	stomach
39	chrX:57934200-57935600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chrX:57934200-57935600	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chrX:57934200-57935600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chrX:57934200-57935600	Weak transcription	Fetal Muscle Leg	muscle
43	chrX:57934200-57935600	Weak transcription	GM12878-XiMat	blood
44	chrX:57934200-57935800	Weak transcription	Osteobl	bone
45	chrX:57934200-57937000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chrX:57934400-57935200	Weak transcription	Adipose Nuclei	Adipose
47	chrX:57934400-57935200	Weak transcription	Left Ventricle	heart
48	chrX:57934400-57935200	Weak transcription	Rectal Smooth Muscle	rectum
49	chrX:57934400-57935400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chrX:57934400-57935400	Weak transcription	Primary B cells from peripheral blood	blood

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