Variant report

Variant	rs661197
Chromosome Location	chr15:40096490-40096491
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr15:40096307-40096591	GM12891	blood:	n/a	chr15:40096504-40096513
2	STAT3	chr15:40096193-40096604	MCF10A-Er-Src	breast:	n/a	n/a
3	CEBPB	chr15:40096235-40096567	K562	blood:	n/a	chr15:40096369-40096380
4	SPI1	chr15:40096359-40096630	GM12891	blood:	n/a	chr15:40096504-40096513
5	FOS	chr15:40096197-40096657	MCF10A-Er-Src	breast:	n/a	chr15:40096502-40096511 chr15:40096470-40096480 chr15:40096470-40096480
6	MYC	chr15:40096220-40096603	MCF10A-Er-Src	breast:	n/a	n/a
7	FOS	chr15:40096211-40096622	MCF10A-Er-Src	breast:	n/a	chr15:40096502-40096511 chr15:40096470-40096480 chr15:40096470-40096480
8	CEBPB	chr15:40096210-40096620	A549	lung:	n/a	chr15:40096369-40096380
9	STAT3	chr15:40096186-40096666	MCF10A-Er-Src	breast:	n/a	n/a
10	CEBPB	chr15:40096196-40096593	IMR90	lung:	n/a	chr15:40096369-40096380
11	CEBPB	chr15:40096192-40096598	A549	lung:	n/a	chr15:40096369-40096380
12	FOS	chr15:40096213-40096628	MCF10A-Er-Src	breast:	n/a	chr15:40096502-40096511 chr15:40096470-40096480 chr15:40096470-40096480
13	STAT3	chr15:40096197-40096543	MCF10A-Er-Src	breast:	n/a	n/a
14	CEBPB	chr15:40096157-40096575	MCF-7	breast:	n/a	chr15:40096369-40096380
15	BATF	chr15:40096320-40096553	GM12878	blood:	n/a	n/a
16	CEBPB	chr15:40096202-40096565	K562	blood:	n/a	chr15:40096369-40096380
17	FOXA1	chr15:40096248-40096501	T-47D	breast:	n/a	n/a
18	CEBPB	chr15:40096206-40096581	Hela-S3	cervix:	n/a	chr15:40096369-40096380
19	FOS	chr15:40096232-40096619	MCF10A-Er-Src	breast:	n/a	chr15:40096502-40096511 chr15:40096470-40096480 chr15:40096470-40096480
20	MYC	chr15:40096284-40096616	MCF10A-Er-Src	breast:	n/a	n/a
21	STAT3	chr15:40096218-40096541	MCF10A-Er-Src	breast:	n/a	n/a
22	CEBPB	chr15:40096196-40096574	HepG2	liver:	n/a	chr15:40096369-40096380
23	CEBPB	chr15:40096256-40096543	MCF-7	breast:	n/a	chr15:40096369-40096380

No.	Distal block	Cell Line	Cell type
1	chr15:40094870..40096704-chr15:40097944..40100228,2	K562	blood:
2	chr15:40080053..40082265-chr15:40095277..40098030,2	K562	blood:
3	chr15:40078779..40080616-chr15:40094906..40097630,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259580	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16969688	1.00[CHD][hapmap]
rs16969692	1.00[CHD][hapmap]
rs16969826	1.00[TSI][hapmap]
rs655289	0.85[YRI][hapmap]
rs659890	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs676437	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7173948	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv832979	chr15:40041928-40218407	Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40076000-40103200	Weak transcription	Right Atrium	heart
2	chr15:40081400-40100200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:40089600-40099400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr15:40090400-40099000	Strong transcription	HUES48 Cell Line	embryonic stem cell
5	chr15:40090400-40099400	Strong transcription	NHLF	lung
6	chr15:40091000-40102600	Weak transcription	Adipose Nuclei	Adipose
7	chr15:40091800-40099400	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr15:40092800-40098200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr15:40094200-40100400	Weak transcription	Spleen	Spleen
10	chr15:40094400-40096800	Weak transcription	NHDF-Ad	bronchial
11	chr15:40094400-40097400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr15:40094400-40097600	Weak transcription	Aorta	Aorta
13	chr15:40094400-40100000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:40094400-40100200	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr15:40094400-40102400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr15:40094400-40109600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr15:40094400-40120400	Weak transcription	HSMMtube	muscle
18	chr15:40094600-40097400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:40094600-40100000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr15:40095400-40099200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr15:40095400-40102600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr15:40095600-40097200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr15:40095800-40096800	Enhancers	Liver	Liver
24	chr15:40095800-40097200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr15:40095800-40097200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr15:40095800-40097200	Enhancers	HMEC	breast
27	chr15:40095800-40097600	Enhancers	NHEK	skin
28	chr15:40095800-40099400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr15:40095800-40099400	Strong transcription	HSMM	muscle
30	chr15:40096000-40096600	Genic enhancers	H9 Cell Line	embryonic stem cell
31	chr15:40096000-40096600	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr15:40096000-40096800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr15:40096000-40099400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr15:40096000-40099400	Strong transcription	Osteobl	bone
35	chr15:40096200-40096600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr15:40096200-40096600	Enhancers	GM12878-XiMat	blood
37	chr15:40096200-40096600	Enhancers	Monocytes-CD14+_RO01746	blood
38	chr15:40096200-40096600	Genic enhancers	NH-A	brain
39	chr15:40096200-40099200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
40	chr15:40096200-40120400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr15:40096400-40098400	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr15:40096400-40100000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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