Variant report

Variant	rs676437
Chromosome Location	chr15:40097623-40097624
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:40096907..40099731-chr15:40116417..40118536,2	MCF-7	breast:
2	chr15:40080053..40082265-chr15:40095277..40098030,2	K562	blood:
3	chr15:40078779..40080616-chr15:40094906..40097630,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs659890	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs661197	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv832979	chr15:40041928-40218407	Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40076000-40103200	Weak transcription	Right Atrium	heart
2	chr15:40081400-40100200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:40089600-40099400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr15:40090400-40099000	Strong transcription	HUES48 Cell Line	embryonic stem cell
5	chr15:40090400-40099400	Strong transcription	NHLF	lung
6	chr15:40091000-40102600	Weak transcription	Adipose Nuclei	Adipose
7	chr15:40091800-40099400	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr15:40092800-40098200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr15:40094200-40100400	Weak transcription	Spleen	Spleen
10	chr15:40094400-40100000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:40094400-40100200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr15:40094400-40102400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr15:40094400-40109600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:40094400-40120400	Weak transcription	HSMMtube	muscle
15	chr15:40094600-40100000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr15:40095400-40099200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr15:40095400-40102600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr15:40095800-40099400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr15:40095800-40099400	Strong transcription	HSMM	muscle
20	chr15:40096000-40099400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr15:40096000-40099400	Strong transcription	Osteobl	bone
22	chr15:40096200-40099200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr15:40096200-40120400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr15:40096400-40098400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr15:40096400-40100000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr15:40096600-40097800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr15:40096600-40101000	Weak transcription	NH-A	brain
28	chr15:40096800-40098800	Strong transcription	NHDF-Ad	bronchial
29	chr15:40096800-40111600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr15:40097200-40102400	Weak transcription	HMEC	breast
31	chr15:40097200-40110000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr15:40097400-40099200	Strong transcription	H1 Cell Line	embryonic stem cell
33	chr15:40097400-40099400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr15:40097600-40098200	Strong transcription	H9 Cell Line	embryonic stem cell
35	chr15:40097600-40099400	Strong transcription	Aorta	Aorta
36	chr15:40097600-40100400	Weak transcription	NHEK	skin

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