Variant report

Variant	rs661497
Chromosome Location	chr13:38742078-38742079
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1924192	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3967019	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61094137	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7334407	0.86[EUR][1000 genomes]
rs7982105	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9532173	0.83[AMR][1000 genomes]
rs9576448	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9576452	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9576453	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9603319	0.83[EUR][1000 genomes]
rs9603322	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv949406	chr13:38561474-39033484	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38740600-38742800	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr13:38740800-38742400	Enhancers	Primary hematopoietic stem cells	blood
3	chr13:38741200-38742400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr13:38741400-38742200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr13:38741800-38742400	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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