Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1924179	0.84[AMR][1000 genomes]
rs1924192	0.83[AMR][1000 genomes]
rs1924199	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2324453	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3967019	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4941885	0.84[AMR][1000 genomes]
rs4943563	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs616106	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6563582	0.90[AMR][1000 genomes]
rs661497	0.83[AMR][1000 genomes]
rs7982105	0.81[AMR][1000 genomes]
rs7992222	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7994361	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7995361	0.84[AMR][1000 genomes]
rs7996113	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9548183	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9548185	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9548186	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9548188	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9548189	0.83[AMR][1000 genomes]
rs9548193	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv949406	chr13:38561474-39033484	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38715400-38726200	Weak transcription	Pancreas	Pancrea
2	chr13:38718800-38721200	Weak transcription	Muscle Satellite Cultured Cells	--

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