Variant report

Variant	rs663099
Chromosome Location	chr1:193935721-193935722
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs588431	1.00[EUR][1000 genomes]
rs595250	1.00[EUR][1000 genomes]
rs596009	1.00[EUR][1000 genomes]
rs622229	1.00[EUR][1000 genomes]
rs622347	1.00[EUR][1000 genomes]
rs624810	1.00[EUR][1000 genomes]
rs625110	1.00[EUR][1000 genomes]
rs642552	1.00[EUR][1000 genomes]
rs643764	1.00[EUR][1000 genomes]
rs656957	1.00[EUR][1000 genomes]
rs657017	1.00[EUR][1000 genomes]
rs664483	1.00[EUR][1000 genomes]
rs680206	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs689263	1.00[EUR][1000 genomes]
rs694277	1.00[EUR][1000 genomes]
rs74131263	1.00[EUR][1000 genomes]
rs74131265	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3372415	chr1:193612172-193988265	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv872834	chr1:193889533-194482304	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv947144	chr1:193921642-193969239	Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193930800-193940600	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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