Variant report

Variant	rs74131263
Chromosome Location	chr1:193994330-193994331
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs588431	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs595250	1.00[EUR][1000 genomes]
rs596009	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs606454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs622229	1.00[EUR][1000 genomes]
rs622347	1.00[EUR][1000 genomes]
rs624810	1.00[EUR][1000 genomes]
rs625110	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs642552	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs643764	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs656957	1.00[EUR][1000 genomes]
rs657017	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs663099	1.00[EUR][1000 genomes]
rs664483	1.00[EUR][1000 genomes]
rs680206	1.00[EUR][1000 genomes]
rs689263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs694277	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74131265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv872834	chr1:193889533-194482304	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv548664	chr1:193938944-194000953	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193993200-193995000	Enhancers	Hela-S3	cervix
2	chr1:193993400-193994600	Enhancers	NH-A	brain
3	chr1:193993600-193994400	Enhancers	NHEK	skin
4	chr1:193993600-193994600	Enhancers	HUVEC	blood vessel
5	chr1:193994200-193994600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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